Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V4S29_RS12655 Genome accession   NZ_CP144498
Coordinates   2542863..2544680 (-) Length   605 a.a.
NCBI ID   WP_347905854.1    Uniprot ID   -
Organism   Enterococcus cecorum strain 66     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2537863..2549680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S29_RS12630 (V4S29_12635) - 2538931..2539143 (+) 213 WP_347905847.1 hypothetical protein -
  V4S29_RS12635 (V4S29_12640) - 2539458..2540300 (+) 843 WP_347905849.1 Rgg/GadR/MutR family transcriptional regulator -
  V4S29_RS12640 (V4S29_12645) - 2540450..2541337 (+) 888 WP_347905851.1 ABC transporter ATP-binding protein -
  V4S29_RS12645 (V4S29_12650) - 2541334..2542068 (+) 735 WP_171336238.1 ABC transporter permease -
  V4S29_RS12650 (V4S29_12655) - 2542061..2542621 (+) 561 WP_171336237.1 hypothetical protein -
  V4S29_RS12655 (V4S29_12660) pepF 2542863..2544680 (-) 1818 WP_347905854.1 oligoendopeptidase F Regulator
  V4S29_RS12660 (V4S29_12665) - 2544722..2545720 (-) 999 WP_347905856.1 competence protein CoiA family protein -
  V4S29_RS12665 (V4S29_12670) ispE 2545796..2546647 (-) 852 WP_047342864.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  V4S29_RS12670 (V4S29_12675) - 2546710..2546880 (-) 171 WP_154656935.1 hypothetical protein -
  V4S29_RS12675 (V4S29_12680) - 2546890..2547138 (-) 249 WP_047334738.1 AbrB family transcriptional regulator -
  V4S29_RS12680 (V4S29_12685) - 2547309..2547740 (-) 432 WP_047334737.1 hypothetical protein -
  V4S29_RS12685 (V4S29_12690) - 2547744..2548274 (-) 531 WP_347905859.1 DUF3278 domain-containing protein -
  V4S29_RS12690 (V4S29_12695) - 2548394..2548855 (-) 462 WP_047334735.1 hypothetical protein -
  V4S29_RS12695 (V4S29_12700) - 2548856..2549047 (-) 192 WP_347905861.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69289.76 Da        Isoelectric Point: 4.7067

>NTDB_id=934133 V4S29_RS12655 WP_347905854.1 2542863..2544680(-) (pepF) [Enterococcus cecorum strain 66]
MSETKQLPLRSEVPEELTWDLSVIFKDDAAFEEAFAALNARLAEVGNYQGTLANGAKAFLAALEYCLDVMRQLETLYVYS
HLRNDQDTTNATDQALHSRANALVAKASEAIAWFEPEVLALEDAKIWGYFDELPELGLYRHYIQQIVDNREHILPAEQEA
LLAGAGEIFGAAADTFSVLNNADLEFPVIEDEKGEKVQLSHGVYGQLLESTDRRVRKDAFEGLYKVYQQFARTFASTLST
NVKRHNYAAKVRHFESARQAALSGNHIPESVYETLVSVVNENLPLLHRYMALRKRLLNLDEMHMYDVYTPLLGESSLKYT
YEEATKEAFKALEPMGEEYLAVVKEAFENRWIDVVENKGKRSGAYSSGCYDTNPYILLNWHDTLDQLFTLVHEMGHSVHS
YFTRKNQPYVYGDYSIFLAEIASTTNENILTEYLLETQKDPKVRAFVLNHYLDGFKATVFRQTQFAEFEHFIHVEDAKGT
PLTAEFLNDYYGNLNKRYYGDAVTSDPQISYEWSRIPHFYYNYYVYQYATGFSAASALAKKILSKEENALENYLNYLKAG
NSDYPIEVMKKAGVDMTKADYLKEAMQVFEQRLDELEALVSELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=934133 V4S29_RS12655 WP_347905854.1 2542863..2544680(-) (pepF) [Enterococcus cecorum strain 66]
ATGTCAGAAACAAAACAATTACCATTACGTTCTGAAGTACCAGAAGAATTAACTTGGGACTTATCTGTCATTTTTAAAGA
CGATGCAGCCTTTGAAGAAGCATTTGCTGCATTGAATGCTCGTTTGGCAGAAGTAGGCAACTATCAAGGAACACTAGCTA
ATGGTGCCAAAGCCTTTTTAGCTGCTTTAGAATATTGCTTAGATGTGATGCGTCAATTAGAAACGCTTTATGTTTATTCT
CATTTACGCAATGACCAAGACACTACCAATGCGACAGATCAAGCGCTACATTCACGTGCCAATGCCTTAGTTGCTAAAGC
TAGTGAAGCCATTGCCTGGTTTGAACCTGAAGTATTAGCATTAGAGGATGCAAAAATTTGGGGTTATTTCGATGAATTAC
CAGAATTAGGCTTATACCGCCATTATATCCAACAAATCGTGGACAATCGCGAACACATTTTACCAGCTGAACAAGAAGCA
TTATTAGCTGGTGCTGGTGAAATTTTTGGCGCTGCAGCAGATACTTTCTCTGTTTTAAACAATGCCGACCTAGAATTTCC
GGTGATTGAAGATGAAAAAGGTGAAAAAGTCCAATTATCTCATGGTGTATATGGTCAATTATTAGAAAGCACTGACCGTC
GTGTACGTAAAGATGCCTTTGAAGGTTTGTATAAAGTGTACCAACAATTTGCGCGTACTTTCGCTTCAACTTTAAGTACC
AATGTGAAACGCCATAACTATGCTGCCAAAGTTCGTCATTTTGAATCTGCCCGTCAAGCAGCATTAAGTGGCAACCATAT
TCCAGAAAGTGTGTACGAAACTTTAGTCAGCGTGGTTAATGAAAACTTACCATTGTTACACCGCTACATGGCTTTGCGCA
AACGTTTATTAAACCTAGACGAAATGCATATGTACGATGTCTACACGCCACTTTTAGGTGAAAGTTCATTGAAATATACT
TATGAAGAAGCCACTAAAGAAGCCTTCAAAGCATTAGAACCAATGGGCGAGGAATACTTAGCTGTGGTGAAAGAAGCTTT
TGAAAACCGCTGGATTGATGTGGTGGAAAATAAAGGTAAACGCAGTGGGGCTTATTCATCAGGTTGCTATGATACCAATC
CATACATCTTGTTAAACTGGCATGATACCCTAGACCAATTATTTACTCTGGTTCATGAAATGGGTCACTCTGTTCATAGT
TACTTCACACGCAAAAATCAACCATATGTATACGGTGATTACTCGATTTTCTTAGCTGAAATTGCGTCTACAACGAATGA
AAATATCTTAACTGAATATTTATTAGAAACACAAAAAGATCCTAAAGTGCGTGCCTTTGTCTTAAATCATTATCTAGATG
GCTTTAAGGCAACTGTTTTCCGTCAAACCCAATTTGCAGAATTTGAACATTTTATTCATGTGGAAGATGCCAAAGGGACA
CCATTAACTGCTGAATTCTTAAATGATTATTATGGCAACTTGAACAAACGCTACTATGGCGATGCAGTAACAAGTGATCC
ACAAATCAGCTATGAATGGTCACGTATCCCTCACTTCTACTACAATTATTACGTTTATCAATATGCAACTGGCTTTAGTG
CTGCCTCTGCCTTAGCGAAGAAGATTTTAAGCAAGGAAGAAAATGCCTTAGAAAACTACTTGAACTATCTAAAAGCTGGT
AATAGTGACTACCCAATCGAAGTGATGAAAAAAGCCGGCGTAGATATGACTAAAGCAGATTATCTAAAAGAAGCCATGCA
AGTCTTCGAACAACGCCTAGACGAACTAGAAGCACTAGTAAGTGAGCTAGAAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

57.36

97.686

0.56