Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8605_RS05730 Genome accession   NZ_AP028358
Coordinates   1101279..1101833 (+) Length   184 a.a.
NCBI ID   WP_002882609.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10569     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1096279..1106833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8605_RS05700 (B10569_11410) pgsA 1096289..1096825 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8605_RS05705 (B10569_11420) rseP 1096822..1097928 (+) 1107 WP_306179577.1 RIP metalloprotease RseP -
  R8605_RS05710 (B10569_11430) - 1097921..1098781 (+) 861 WP_070265002.1 VirK family antimicrobial peptide resistance protein -
  R8605_RS05715 (B10569_11440) - 1098797..1099537 (-) 741 WP_308042775.1 sugar phosphate isomerase/epimerase family protein -
  R8605_RS05720 - 1099534..1100639 (-) 1106 Protein_1102 MFS transporter -
  R8605_RS05725 (B10569_11470) rpsF 1100893..1101270 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8605_RS05730 (B10569_11480) ssb 1101279..1101833 (+) 555 WP_002882609.1 single-stranded DNA-binding protein Machinery gene
  R8605_RS05735 (B10569_11490) rpsR 1101844..1102104 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8605_RS05740 (B10569_11500) lon 1102165..1104540 (-) 2376 WP_002866098.1 endopeptidase La -
  R8605_RS05745 (B10569_11510) bamD 1104557..1105204 (-) 648 WP_052802090.1 outer membrane protein assembly factor BamD -
  R8605_RS05750 (B10569_11520) fliW 1105365..1105754 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8605_RS05755 (B10569_11530) proC 1105754..1106485 (+) 732 WP_308042774.1 pyrroline-5-carboxylate reductase Machinery gene
  R8605_RS05760 (B10569_11540) ctsT 1106482..1106784 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20824.71 Da        Isoelectric Point: 5.0431

>NTDB_id=93311 R8605_RS05730 WP_002882609.1 1101279..1101833(+) (ssb) [Campylobacter jejuni strain BCH-10569]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWNDQNGQNRSKHSIQVENMEMLGGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQN
PQHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=93311 R8605_RS05730 WP_002882609.1 1101279..1101833(+) (ssb) [Campylobacter jejuni strain BCH-10569]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAATGATCAAAATGGACAAAATCGCTCTAAGCATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCGGCAA
TTCCAATGCTCCACAACAAGGTGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATC
AAAGCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAAC
CCACAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.83

100

0.397

Multiple sequence alignment