Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JPge_RS05970 Genome accession   NZ_AP025624
Coordinates   1142489..1143733 (+) Length   414 a.a.
NCBI ID   WP_244404681.1    Uniprot ID   -
Organism   Saccharococcus caldoxylosilyticus strain KH1-6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1137489..1148733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JPge_RS05940 (PcaKH16_11220) yfmH 1137626..1138918 (+) 1293 WP_244404680.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  JPge_RS05945 (PcaKH16_11230) ymfI 1138957..1139673 (+) 717 WP_017437019.1 elongation factor P 5-aminopentanone reductase -
  JPge_RS05950 (PcaKH16_11240) - 1139735..1139986 (+) 252 WP_017437018.1 DUF3243 domain-containing protein -
  JPge_RS05955 (PcaKH16_11250) - 1140129..1140920 (+) 792 WP_218687742.1 DUF3388 domain-containing protein -
  JPge_RS05960 (PcaKH16_11260) - 1140945..1141823 (+) 879 WP_017437016.1 helix-turn-helix domain-containing protein -
  JPge_RS05965 (PcaKH16_11270) pgsA 1141874..1142452 (+) 579 WP_042407054.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JPge_RS05970 (PcaKH16_11280) cinA 1142489..1143733 (+) 1245 WP_244404681.1 competence/damage-inducible protein A Machinery gene
  JPge_RS05975 (PcaKH16_11290) recA 1143900..1144949 (+) 1050 WP_017437013.1 recombinase RecA Machinery gene
  JPge_RS05980 (PcaKH16_11300) rny 1145408..1146964 (+) 1557 WP_017437012.1 ribonuclease Y -
  JPge_RS05985 (PcaKH16_11310) - 1147051..1147845 (+) 795 WP_042407048.1 TIGR00282 family metallophosphoesterase -
  JPge_RS05990 (PcaKH16_11320) spoVS 1147975..1148235 (+) 261 WP_003251598.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45075.95 Da        Isoelectric Point: 7.2432

>NTDB_id=93191 JPge_RS05970 WP_244404681.1 1142489..1143733(+) (cinA) [Saccharococcus caldoxylosilyticus strain KH1-6]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAGLGINVYFHTVVGDNAARLEQAVKVARTRADLIIFTGGLGPTKDDLTKET
IARLLQRKLVTDEEALRSIEAYFARTNRIMTENNKKQALVLQGSVILKNEHGMAPGMAITIDSITYMLLPGPPKEMQPMF
LKYGRAFLLEKLGQQERIESRVLRFFGIGESELETRIQDLIDQQSNPTIAPLAGDGEVTLRLTAKHRSEAEAKKMLDETE
KKIVERVGAYLYGYNEETLFEKVIQTLKAQKKTVAAAESLTGGLFLEQLTAVPGASQVVRGGVVCYTNDVKEKVLGVPHA
VLTADGAVSERCACLLAENVRTLCQADIGISFTGVAGPAPLEGKPVGTVYIGISTSDNRTDVYPLTLSGQRDAIRVRTAK
YGCSFLLKALDGYR

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=93191 JPge_RS05970 WP_244404681.1 1142489..1143733(+) (cinA) [Saccharococcus caldoxylosilyticus strain KH1-6]
TTGAACGCAGAGATTATTGCTGTTGGCTCTGAGCTGTTGCTCGGACAAATCGCCAACACCAATGCGCAGTTTTTGTCGCA
GCAGCTTGCCGGGCTTGGCATTAACGTTTATTTTCATACTGTTGTCGGTGATAATGCCGCTAGGCTCGAGCAGGCGGTAA
AAGTGGCGCGAACAAGGGCCGACCTGATTATTTTTACCGGCGGGCTCGGTCCGACGAAAGACGATTTAACGAAAGAAACG
ATCGCTCGTCTGCTGCAGCGGAAGCTGGTGACGGATGAGGAAGCGCTGCGTTCCATTGAAGCGTATTTTGCCCGCACAAA
CCGGATCATGACGGAAAATAATAAAAAGCAGGCATTGGTGTTGCAAGGCTCTGTCATATTAAAAAATGAGCACGGCATGG
CGCCGGGGATGGCAATTACAATCGATTCCATTACCTATATGCTTTTGCCCGGACCGCCAAAAGAAATGCAGCCGATGTTT
CTCAAATACGGCCGCGCTTTTTTGCTAGAGAAGCTTGGACAGCAGGAACGCATTGAATCGCGCGTATTGCGTTTTTTTGG
CATTGGCGAGTCAGAGTTGGAAACAAGAATTCAAGACTTGATTGATCAGCAGTCCAATCCGACGATTGCCCCGCTTGCCG
GCGACGGAGAGGTGACGTTGCGTTTGACCGCGAAGCACCGCTCGGAAGCAGAGGCAAAAAAAATGCTTGATGAGACGGAA
AAGAAAATTGTTGAACGCGTCGGCGCCTATCTTTATGGCTATAATGAAGAAACATTATTTGAAAAGGTGATTCAGACGCT
AAAAGCACAAAAGAAAACAGTGGCAGCGGCTGAAAGCTTAACAGGCGGGCTTTTCCTAGAGCAACTGACAGCTGTTCCTG
GTGCTTCCCAAGTGGTTCGCGGCGGCGTCGTCTGCTATACGAATGATGTAAAAGAAAAAGTGCTTGGCGTCCCCCATGCC
GTTTTAACAGCCGACGGCGCGGTAAGCGAACGTTGCGCGTGCCTGTTGGCGGAAAACGTCCGCACGCTCTGCCAGGCGGA
TATTGGCATCAGCTTTACCGGTGTAGCAGGGCCAGCCCCGCTTGAAGGGAAGCCAGTTGGCACTGTATATATCGGCATTT
CCACTTCCGATAATAGGACGGATGTTTATCCGCTCACCTTATCCGGCCAGCGCGACGCAATTCGCGTCCGCACCGCAAAG
TATGGCTGCTCCTTCCTATTAAAAGCATTGGACGGCTACCGATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.68

98.792

0.58
  cinA Streptococcus mitis SK321

47.143

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.905

100

0.476
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.476
  cinA Streptococcus pneumoniae R6

46.905

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.905

100

0.476
  cinA Streptococcus pneumoniae D39

46.667

100

0.473
  cinA Streptococcus mutans UA159

49.737

91.787

0.457
  cinA Streptococcus suis isolate S10

42.895

91.787

0.394

Multiple sequence alignment