Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | V3C05_RS05315 | Genome accession | NZ_CP143878 |
| Coordinates | 1146024..1146473 (+) | Length | 149 a.a. |
| NCBI ID | WP_266199913.1 | Uniprot ID | - |
| Organism | Pasteurella multocida subsp. multocida strain LH06 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1094756..1149410 | 1146024..1146473 | within | 0 |
Gene organization within MGE regions
Location: 1094756..1149410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V3C05_RS04990 (V3C05_04990) | - | 1094756..1095226 (+) | 471 | WP_005717460.1 | FxsA family protein | - |
| V3C05_RS04995 (V3C05_04995) | - | 1095315..1095605 (+) | 291 | WP_005717461.1 | co-chaperone GroES | - |
| V3C05_RS05000 (V3C05_05000) | groL | 1095701..1097344 (+) | 1644 | WP_330962156.1 | chaperonin GroEL | - |
| V3C05_RS05005 (V3C05_05005) | modA | 1097479..1098216 (+) | 738 | WP_005723309.1 | molybdate ABC transporter substrate-binding protein | - |
| V3C05_RS05010 (V3C05_05010) | - | 1098191..1098988 (+) | 798 | WP_005723310.1 | ABC transporter permease | - |
| V3C05_RS05015 (V3C05_05015) | - | 1098990..1099589 (+) | 600 | WP_010907021.1 | ABC transporter ATP-binding protein | - |
| V3C05_RS05020 (V3C05_05020) | modD | 1099607..1100455 (+) | 849 | WP_005757236.1 | ModD protein | - |
| V3C05_RS05025 (V3C05_05025) | - | 1100551..1102383 (-) | 1833 | WP_005754621.1 | DEAD/DEAH box helicase | - |
| V3C05_RS05030 (V3C05_05030) | nlpI | 1102491..1103387 (-) | 897 | WP_010907022.1 | lipoprotein NlpI | - |
| V3C05_RS05035 (V3C05_05035) | pnp | 1103471..1105615 (-) | 2145 | WP_330962157.1 | polyribonucleotide nucleotidyltransferase | - |
| V3C05_RS05040 (V3C05_05040) | - | 1106301..1106813 (+) | 513 | WP_014390763.1 | hypothetical protein | - |
| V3C05_RS05045 (V3C05_05045) | - | 1106813..1107559 (+) | 747 | WP_014390762.1 | hypothetical protein | - |
| V3C05_RS05050 (V3C05_05050) | - | 1107950..1108273 (-) | 324 | WP_014667801.1 | hypothetical protein | - |
| V3C05_RS05055 (V3C05_05055) | - | 1108321..1114215 (-) | 5895 | WP_330962158.1 | phage tail protein | - |
| V3C05_RS05060 (V3C05_05060) | - | 1114219..1114839 (-) | 621 | WP_014667799.1 | tail assembly protein | - |
| V3C05_RS05065 (V3C05_05065) | - | 1114782..1115526 (-) | 745 | Protein_969 | C40 family peptidase | - |
| V3C05_RS05070 (V3C05_05070) | - | 1115531..1116235 (-) | 705 | WP_078819787.1 | phage minor tail protein L | - |
| V3C05_RS05075 (V3C05_05075) | - | 1116389..1116955 (-) | 567 | WP_078819667.1 | hypothetical protein | - |
| V3C05_RS05080 (V3C05_05080) | - | 1117027..1117377 (-) | 351 | WP_005719622.1 | phage tail protein | - |
| V3C05_RS05085 (V3C05_05085) | - | 1117374..1119746 (-) | 2373 | WP_078819786.1 | phage tail length tape measure family protein | - |
| V3C05_RS05090 (V3C05_05090) | - | 1119733..1119993 (-) | 261 | WP_075269217.1 | phage tail assembly protein T | - |
| V3C05_RS05095 (V3C05_05095) | - | 1120056..1120445 (-) | 390 | WP_016533230.1 | phage minor tail protein G | - |
| V3C05_RS05100 (V3C05_05100) | - | 1120451..1120957 (-) | 507 | WP_267174542.1 | phage tail tube protein | - |
| V3C05_RS05105 (V3C05_05105) | gpU | 1120954..1121361 (-) | 408 | WP_014391486.1 | phage tail terminator protein | - |
| V3C05_RS05110 (V3C05_05110) | - | 1121358..1121909 (-) | 552 | WP_014391485.1 | phage tail protein | - |
| V3C05_RS05115 (V3C05_05115) | - | 1121909..1122202 (-) | 294 | WP_014391484.1 | hypothetical protein | - |
| V3C05_RS05120 (V3C05_05120) | - | 1122195..1122521 (-) | 327 | WP_016570083.1 | DUF2190 family protein | - |
| V3C05_RS05125 (V3C05_05125) | - | 1122594..1124603 (-) | 2010 | WP_330962159.1 | ClpP-like prohead protease/major capsid protein fusion protein | - |
| V3C05_RS05130 (V3C05_05130) | - | 1124539..1126077 (-) | 1539 | WP_330962160.1 | phage portal protein | - |
| V3C05_RS05135 (V3C05_05135) | - | 1126074..1126295 (-) | 222 | WP_014391481.1 | hypothetical protein | - |
| V3C05_RS05140 (V3C05_05140) | - | 1126292..1128400 (-) | 2109 | WP_330962161.1 | phage terminase large subunit family protein | - |
| V3C05_RS05145 (V3C05_05145) | - | 1128404..1128877 (-) | 474 | WP_014391479.1 | DUF1441 family protein | - |
| V3C05_RS05150 (V3C05_05150) | - | 1129167..1129427 (+) | 261 | WP_005720780.1 | type II toxin-antitoxin system RelE family toxin | - |
| V3C05_RS05155 (V3C05_05155) | - | 1129463..1129831 (+) | 369 | WP_014391478.1 | helix-turn-helix domain-containing protein | - |
| V3C05_RS05160 (V3C05_05160) | - | 1130041..1130364 (-) | 324 | WP_078801840.1 | DUF2570 family protein | - |
| V3C05_RS05165 (V3C05_05165) | - | 1130337..1130867 (-) | 531 | WP_330962115.1 | lysozyme | - |
| V3C05_RS05170 (V3C05_05170) | - | 1130864..1131121 (-) | 258 | WP_081376958.1 | HP1 family phage holin | - |
| V3C05_RS05175 (V3C05_05175) | - | 1131239..1131802 (+) | 564 | WP_014667793.1 | hypothetical protein | - |
| V3C05_RS05180 (V3C05_05180) | - | 1131928..1132389 (-) | 462 | WP_014667792.1 | antiterminator Q family protein | - |
| V3C05_RS05185 (V3C05_05185) | - | 1132390..1132992 (-) | 603 | WP_170376544.1 | recombination protein NinG | - |
| V3C05_RS05190 (V3C05_05190) | - | 1132985..1133200 (-) | 216 | WP_225529666.1 | hypothetical protein | - |
| V3C05_RS05195 (V3C05_05195) | - | 1133274..1133732 (-) | 459 | WP_014391471.1 | recombination protein NinB | - |
| V3C05_RS05200 (V3C05_05200) | - | 1133722..1134258 (-) | 537 | WP_178384709.1 | phage N-6-adenine-methyltransferase | - |
| V3C05_RS05205 (V3C05_05205) | - | 1134262..1134951 (-) | 690 | WP_225529667.1 | replication protein P | - |
| V3C05_RS05210 (V3C05_05210) | - | 1134951..1135766 (-) | 816 | WP_266199956.1 | helix-turn-helix domain-containing protein | - |
| V3C05_RS05215 (V3C05_05215) | - | 1135763..1135978 (-) | 216 | WP_075271368.1 | hypothetical protein | - |
| V3C05_RS05220 (V3C05_05220) | - | 1135975..1136658 (-) | 684 | WP_014390721.1 | phage antirepressor KilAC domain-containing protein | - |
| V3C05_RS05225 (V3C05_05225) | - | 1136716..1137165 (-) | 450 | WP_099821840.1 | YmfL family putative regulatory protein | - |
| V3C05_RS05230 (V3C05_05230) | - | 1137214..1137399 (-) | 186 | WP_046339050.1 | Cro/CI family transcriptional regulator | - |
| V3C05_RS05235 (V3C05_05235) | - | 1137527..1138303 (+) | 777 | WP_071523582.1 | helix-turn-helix transcriptional regulator | - |
| V3C05_RS05240 (V3C05_05240) | - | 1138372..1139277 (-) | 906 | WP_064964924.1 | type VI secretion system-associated protein TagO | - |
| V3C05_RS05245 (V3C05_05245) | - | 1139545..1139712 (-) | 168 | WP_005756653.1 | YegP family protein | - |
| V3C05_RS05250 (V3C05_05250) | - | 1139725..1139934 (+) | 210 | WP_005756656.1 | hypothetical protein | - |
| V3C05_RS05255 (V3C05_05255) | - | 1140175..1140405 (+) | 231 | WP_075271373.1 | hypothetical protein | - |
| V3C05_RS05260 (V3C05_05260) | - | 1140418..1140588 (+) | 171 | WP_014391460.1 | hypothetical protein | - |
| V3C05_RS05265 (V3C05_05265) | - | 1140569..1140763 (-) | 195 | WP_014391459.1 | hypothetical protein | - |
| V3C05_RS05270 (V3C05_05270) | - | 1140975..1141238 (+) | 264 | WP_071522857.1 | hypothetical protein | - |
| V3C05_RS05275 (V3C05_05275) | - | 1141325..1142122 (+) | 798 | WP_032854018.1 | hypothetical protein | - |
| V3C05_RS05280 (V3C05_05280) | - | 1142535..1143176 (+) | 642 | WP_330962162.1 | Bro-N domain-containing protein | - |
| V3C05_RS05285 (V3C05_05285) | - | 1143238..1143468 (-) | 231 | WP_223251317.1 | hypothetical protein | - |
| V3C05_RS05290 (V3C05_05290) | - | 1143616..1143915 (+) | 300 | WP_078802174.1 | hypothetical protein | - |
| V3C05_RS05295 (V3C05_05295) | - | 1143887..1144123 (+) | 237 | WP_330962019.1 | hypothetical protein | - |
| V3C05_RS05300 (V3C05_05300) | - | 1144136..1144423 (+) | 288 | WP_014391452.1 | hypothetical protein | - |
| V3C05_RS05305 (V3C05_05305) | - | 1144425..1145378 (+) | 954 | WP_014391451.1 | recombinase RecT | - |
| V3C05_RS05310 (V3C05_05310) | - | 1145365..1146024 (+) | 660 | WP_041423209.1 | translocation protein TolB precursor | - |
| V3C05_RS05315 (V3C05_05315) | ssb | 1146024..1146473 (+) | 450 | WP_266199913.1 | single-stranded DNA-binding protein | Machinery gene |
| V3C05_RS05320 (V3C05_05320) | - | 1146623..1147903 (+) | 1281 | WP_016533798.1 | site-specific integrase | - |
| V3C05_RS05325 (V3C05_05325) | - | 1147890..1149410 (+) | 1521 | WP_010907418.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 17024.90 Da Isoelectric Point: 6.9835
>NTDB_id=931643 V3C05_RS05315 WP_266199913.1 1146024..1146473(+) (ssb) [Pasteurella multocida subsp. multocida strain LH06]
MAGVNRVIILGNLGSDPEIRTMPNGDPVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
KLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKSGKPVQKFDNFEEDDIPF
MAGVNRVIILGNLGSDPEIRTMPNGDPVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
KLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKSGKPVQKFDNFEEDDIPF
Nucleotide
Download Length: 450 bp
>NTDB_id=931643 V3C05_RS05315 WP_266199913.1 1146024..1146473(+) (ssb) [Pasteurella multocida subsp. multocida strain LH06]
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAGCGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTGGCAAAAATCAGTGTGGCCACAAGTGAAAGCTGGATTGATAAAAACACAAACGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGGCAGTATTTGAAGAAAGGCTCGAAAGTTTATGTGGAAGGT
AAGCTCAGAACACGCAAATGGCAAGATCAAAATGGTCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAAGTGGAA
AACCAGTGCAGAAGTTTGATAATTTTGAAGAAGACGATATACCGTTTTGA
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAGCGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTGGCAAAAATCAGTGTGGCCACAAGTGAAAGCTGGATTGATAAAAACACAAACGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGGCAGTATTTGAAGAAAGGCTCGAAAGTTTATGTGGAAGGT
AAGCTCAGAACACGCAAATGGCAAGATCAAAATGGTCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAAGTGGAA
AACCAGTGCAGAAGTTTGATAATTTTGAAGAAGACGATATACCGTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
61.878 |
100 |
0.752 |
| ssb | Vibrio cholerae strain A1552 |
52.518 |
93.289 |
0.49 |
| ssb | Neisseria meningitidis MC58 |
39.548 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
43.796 |
91.946 |
0.403 |