Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VZG88_RS11535 Genome accession   NZ_CP143871
Coordinates   2292318..2293385 (+) Length   355 a.a.
NCBI ID   WP_208674823.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2287318..2298385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS11510 (VZG88_11510) - 2287819..2288781 (-) 963 WP_208678225.1 bile acid:sodium symporter family protein -
  VZG88_RS11515 (VZG88_11515) msrB 2288909..2289430 (+) 522 WP_208678224.1 peptide-methionine (R)-S-oxide reductase MsrB -
  VZG88_RS11520 (VZG88_11520) - 2289421..2290554 (-) 1134 WP_208678223.1 MlaD family protein -
  VZG88_RS11525 (VZG88_11525) - 2290582..2291376 (-) 795 WP_208678222.1 ATP-binding cassette domain-containing protein -
  VZG88_RS11530 (VZG88_11530) - 2291633..2292193 (+) 561 WP_338438094.1 DUF3611 family protein -
  VZG88_RS11535 (VZG88_11535) recA 2292318..2293385 (+) 1068 WP_208674823.1 recombinase RecA Machinery gene
  VZG88_RS11540 (VZG88_11540) - 2293565..2293729 (-) 165 WP_208678221.1 hypothetical protein -
  VZG88_RS11545 (VZG88_11545) pgeF 2293878..2294645 (-) 768 WP_208678220.1 peptidoglycan editing factor PgeF -
  VZG88_RS11550 (VZG88_11550) - 2294691..2295458 (+) 768 WP_208678219.1 biotin--[acetyl-CoA-carboxylase] ligase -
  VZG88_RS11555 (VZG88_11555) - 2295543..2296586 (+) 1044 WP_208679040.1 M23 family metallopeptidase -
  VZG88_RS11560 (VZG88_11560) psb27 2296676..2297077 (-) 402 WP_208678218.1 photosystem II protein Psb27 -
  VZG88_RS11565 (VZG88_11565) - 2297141..2297368 (-) 228 WP_208678217.1 hypothetical protein -
  VZG88_RS11570 (VZG88_11570) - 2297482..2298018 (-) 537 WP_208678216.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37832.31 Da        Isoelectric Point: 5.3005

>NTDB_id=931636 VZG88_RS11535 WP_208674823.1 2292318..2293385(+) (recA) [Synechococcus elongatus IITB6]
MASKSDAIAPEKEKALNLVLSQIERNFGKGAIMRLGDAARLRVETIPTGALTLDLALGGGLPKGRIIEVYGPESSGKTTL
TLHAIAEVQKQGGIAAFVDAEHALDPVYATALGVDIDNLLISQPDTGEMALEIVDQLVRSAAVDIVVIDSVAALVPRAEI
EGEMGDTQVGLQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGSPETTTGGQALKFYASVRLDIRRIQTLKKGT
EEYGTRAKVKVVKNKVAPPFRIAEFDILFGKGISTLGCLVDLAEETGVILRKGAWYSYNGDNIGQGRDNTITYLDEHPDF
RATVEQQVREKLALGAQVSANTVGAAPAAVTADED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=931636 VZG88_RS11535 WP_208674823.1 2292318..2293385(+) (recA) [Synechococcus elongatus IITB6]
ATGGCTAGCAAATCGGACGCGATCGCTCCAGAGAAGGAAAAAGCCCTAAATCTTGTGCTCAGCCAGATTGAGCGCAACTT
TGGTAAGGGTGCCATCATGCGCCTTGGCGACGCGGCGCGGCTGCGGGTCGAAACGATTCCCACGGGGGCGCTGACCCTTG
ATCTGGCGCTGGGAGGTGGTTTGCCCAAGGGTCGGATTATCGAAGTTTATGGCCCCGAAAGCTCGGGTAAAACCACACTC
ACCTTGCATGCGATCGCCGAAGTTCAAAAGCAGGGAGGCATTGCTGCTTTTGTGGATGCTGAACACGCCCTTGATCCGGT
CTATGCCACAGCCTTAGGGGTCGACATCGATAACTTGCTGATCTCTCAGCCCGACACTGGCGAGATGGCACTGGAAATTG
TTGATCAACTGGTGCGCTCGGCAGCCGTCGACATTGTGGTGATCGACTCAGTTGCAGCCCTCGTTCCCCGCGCTGAAATT
GAAGGGGAAATGGGTGATACCCAAGTGGGTCTGCAGGCTCGCTTGATGAGCCAAGCAATGCGGAAAATCACTGGCAACAT
TGGCAAATCAGGCTGTACGGTCATCTTCCTGAACCAGCTGCGCCAAAAGATCGGCGTCACCTACGGTAGCCCTGAGACGA
CGACCGGTGGCCAAGCCCTGAAGTTCTACGCGTCTGTTCGTCTGGATATTCGTCGGATTCAAACCCTAAAAAAAGGAACG
GAAGAATACGGCACCCGCGCCAAGGTCAAGGTTGTCAAAAACAAGGTGGCACCACCCTTCCGTATTGCCGAATTTGACAT
TCTCTTCGGCAAAGGCATTTCTACCCTCGGTTGTTTGGTCGATTTGGCCGAAGAAACTGGCGTGATCCTGCGCAAGGGCG
CTTGGTACAGCTACAACGGCGACAATATCGGCCAAGGTCGCGACAACACGATTACTTACCTAGACGAACATCCCGACTTC
CGAGCAACGGTCGAGCAGCAAGTGCGTGAAAAATTAGCTCTCGGTGCCCAAGTCTCAGCCAATACGGTTGGGGCTGCTCC
TGCTGCGGTGACAGCCGACGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

63.188

97.183

0.614
  recA Ralstonia pseudosolanacearum GMI1000

61.473

99.437

0.611
  recA Acinetobacter baylyi ADP1

66.77

90.704

0.606
  recA Acinetobacter baumannii D1279779

66.149

90.704

0.6
  recA Glaesserella parasuis strain SC1401

59.885

98.31

0.589
  recA Streptococcus pneumoniae D39

58.892

96.62

0.569
  recA Streptococcus pneumoniae Rx1

58.892

96.62

0.569
  recA Streptococcus pneumoniae R6

58.892

96.62

0.569
  recA Streptococcus pneumoniae TIGR4

58.892

96.62

0.569
  recA Neisseria gonorrhoeae strain FA1090

62.037

91.268

0.566
  recA Neisseria gonorrhoeae MS11

62.037

91.268

0.566
  recA Neisseria gonorrhoeae MS11

62.037

91.268

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

61.538

91.549

0.563
  recA Vibrio cholerae strain A1552

61.801

90.704

0.561
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

90.704

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.875

90.141

0.558
  recA Streptococcus mitis SK321

58.631

94.648

0.555
  recA Helicobacter pylori 26695

58.683

94.085

0.552
  recA Helicobacter pylori strain NCTC11637

58.683

94.085

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.817

95.493

0.552
  recA Streptococcus mitis NCTC 12261

58.333

94.648

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.877

91.268

0.546
  recA Streptococcus mutans UA159

58.485

92.958

0.544
  recA Streptococcus pyogenes NZ131

58.716

92.113

0.541
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.831

93.521

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

91.831

0.532