Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8612_RS03630 Genome accession   NZ_AP028351
Coordinates   728844..729392 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain BCH-10460     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 723844..734392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8612_RS03600 (B10460_07120) ctsT 723887..724192 (-) 306 WP_002777852.1 hypothetical protein Machinery gene
  R8612_RS03605 (B10460_07130) proC 724189..724926 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  R8612_RS03610 (B10460_07140) fliW 724926..725315 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  R8612_RS03615 (B10460_07150) - 725479..726126 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  R8612_RS03620 (B10460_07160) lon 726142..728517 (+) 2376 WP_002783351.1 endopeptidase La -
  R8612_RS03625 (B10460_07170) rpsR 728573..728833 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  R8612_RS03630 (B10460_07180) ssb 728844..729392 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  R8612_RS03635 (B10460_07190) rpsF 729401..729778 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  R8612_RS03640 (B10460_07200) - 730058..731329 (+) 1272 WP_150966198.1 MFS transporter -
  R8612_RS03645 (B10460_07210) - 731329..732330 (+) 1002 WP_150966200.1 sugar phosphate isomerase/epimerase -
  R8612_RS03650 - 732323..733180 (-) 858 Protein_717 VirK family antimicrobial peptide resistance protein -
  R8612_RS03655 (B10460_07240) rseP 733177..734280 (-) 1104 WP_002787897.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=93137 R8612_RS03630 WP_002777084.1 728844..729392(-) (ssb) [Campylobacter coli strain BCH-10460]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=93137 R8612_RS03630 WP_002777084.1 728844..729392(-) (ssb) [Campylobacter coli strain BCH-10460]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment