Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ACB343_RS07405 Genome accession   NZ_CP167012
Coordinates   1453565..1454599 (-) Length   344 a.a.
NCBI ID   WP_011285080.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 17     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1448565..1459599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB343_RS07370 (ACB343_07370) - 1449341..1449643 (-) 303 WP_011285079.1 YlxQ-related RNA-binding protein -
  ACB343_RS07375 (ACB343_07375) rnpM 1449636..1449932 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  ACB343_RS07380 (ACB343_07380) nusA 1449948..1451105 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  ACB343_RS07385 (ACB343_07385) rimP 1451280..1451816 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  ACB343_RS07395 (ACB343_07395) trmB 1452075..1452710 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACB343_RS07400 (ACB343_07400) ccrZ 1452710..1453501 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  ACB343_RS07405 (ACB343_07405) pptB 1453565..1454599 (-) 1035 WP_011285080.1 ABC transporter permease Regulator
  ACB343_RS07410 (ACB343_07410) pptA 1454602..1455327 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  ACB343_RS07415 (ACB343_07415) - 1455399..1455818 (+) 420 WP_011285081.1 HIT family protein -
  ACB343_RS07420 (ACB343_07420) - 1455815..1456171 (+) 357 WP_002988657.1 hypothetical protein -
  ACB343_RS07425 (ACB343_07425) - 1456282..1457565 (-) 1284 WP_002983372.1 LCP family protein -
  ACB343_RS07430 (ACB343_07430) - 1457574..1458098 (-) 525 WP_011285082.1 GNAT family N-acetyltransferase -
  ACB343_RS07435 (ACB343_07435) tsaE 1458073..1458534 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40272.48 Da        Isoelectric Point: 10.3422

>NTDB_id=930750 ACB343_RS07405 WP_011285080.1 1453565..1454599(-) (pptB) [Streptococcus pyogenes strain Isolate 17]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGYAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAILLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=930750 ACB343_RS07405 WP_011285080.1 1453565..1454599(-) (pptB) [Streptococcus pyogenes strain Isolate 17]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTATGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTTTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTATATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427