Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACB340_RS08610 Genome accession   NZ_CP167005
Coordinates   1707903..1709171 (+) Length   422 a.a.
NCBI ID   WP_002982538.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1702903..1714171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB340_RS08585 (ACB340_08585) - 1703071..1703820 (-) 750 WP_115224659.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ACB340_RS08590 (ACB340_08590) prmA 1703820..1704773 (-) 954 WP_014635734.1 50S ribosomal protein L11 methyltransferase -
  ACB340_RS08595 (ACB340_08595) - 1704844..1705314 (-) 471 WP_011285734.1 DUF3013 family protein -
  ACB340_RS08600 (ACB340_08600) pabB 1705514..1707271 (+) 1758 WP_023079295.1 aminodeoxychorismate synthase component I -
  ACB340_RS08605 (ACB340_08605) - 1707304..1707870 (+) 567 WP_010922701.1 aminodeoxychorismate/anthranilate synthase component II -
  ACB340_RS08610 (ACB340_08610) rarA 1707903..1709171 (+) 1269 WP_002982538.1 replication-associated recombination protein A Machinery gene
  ACB340_RS08625 (ACB340_08625) - 1709669..1710109 (+) 441 WP_011889182.1 GNAT family N-acetyltransferase -
  ACB340_RS08630 (ACB340_08630) - 1710164..1710670 (+) 507 WP_023079287.1 DNA topology modulation protein -
  ACB340_RS08635 (ACB340_08635) smeZ 1710919..1711620 (+) 702 WP_023079286.1 streptococcal mitogenic exotoxin SmeZ -
  ACB340_RS08640 (ACB340_08640) - 1712350..1713978 (+) 1629 WP_021775366.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46645.07 Da        Isoelectric Point: 6.3774

>NTDB_id=930103 ACB340_RS08610 WP_002982538.1 1707903..1709171(+) (rarA) [Streptococcus pyogenes strain Isolate 27]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=930103 ACB340_RS08610 WP_002982538.1 1707903..1709171(+) (rarA) [Streptococcus pyogenes strain Isolate 27]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACTATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTAGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATAGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59