Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ACB354_RS04100 Genome accession   NZ_CP167004
Coordinates   743066..743662 (+) Length   198 a.a.
NCBI ID   WP_002983939.1    Uniprot ID   P65996
Organism   Streptococcus pyogenes strain Isolate 28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 738066..748662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB354_RS04070 (ACB354_04070) - 738174..739109 (-) 936 WP_010922443.1 dihydroorotate oxidase -
  ACB354_RS04075 (ACB354_04075) - 739348..740043 (+) 696 WP_002983928.1 phosphoglycerate mutase -
  ACB354_RS04080 (ACB354_04080) - 740150..740671 (+) 522 WP_011017960.1 transcription repressor NadR -
  ACB354_RS04085 (ACB354_04085) - 740832..741374 (+) 543 WP_011017959.1 hypothetical protein -
  ACB354_RS04090 (ACB354_04090) - 741498..742277 (+) 780 WP_021340400.1 formate/nitrite transporter family protein -
  ACB354_RS04095 (ACB354_04095) - 742837..743019 (+) 183 WP_011888786.1 penicillin-binding protein -
  ACB354_RS04100 (ACB354_04100) recR 743066..743662 (+) 597 WP_002983939.1 recombination mediator RecR Machinery gene
  ACB354_RS04105 (ACB354_04105) - 743763..744809 (+) 1047 WP_002994369.1 D-alanine--D-alanine ligase -
  ACB354_RS04110 (ACB354_04110) murF 745008..746399 (+) 1392 WP_011184722.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  ACB354_RS04115 (ACB354_04115) - 746479..747174 (+) 696 WP_011017956.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21644.79 Da        Isoelectric Point: 4.8853

>NTDB_id=929973 ACB354_RS04100 WP_002983939.1 743066..743662(+) (recR) [Streptococcus pyogenes strain Isolate 28]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=929973 ACB354_RS04100 WP_002983939.1 743066..743662(+) (recR) [Streptococcus pyogenes strain Isolate 28]
GTGCTTTATCCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAATTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65996

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.889

100

0.889
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5