Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACB354_RS02785 Genome accession   NZ_CP167004
Coordinates   518896..519504 (-) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain Isolate 28     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 513896..524504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB354_RS02770 (ACB354_02770) nadE 513931..514755 (+) 825 WP_011888661.1 ammonia-dependent NAD(+) synthetase -
  ACB354_RS02775 (ACB354_02775) pepC 514940..516277 (+) 1338 WP_011184829.1 aminopeptidase C -
  ACB354_RS02780 (ACB354_02780) pbp1a 516744..518909 (-) 2166 WP_011184828.1 penicillin-binding protein PBP1A -
  ACB354_RS02785 (ACB354_02785) recU 518896..519504 (-) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  ACB354_RS02790 (ACB354_02790) - 519585..520100 (+) 516 WP_011184827.1 DUF1273 domain-containing protein -
  ACB354_RS02795 (ACB354_02795) gpsB 520222..520548 (+) 327 WP_002983626.1 cell division regulator GpsB -
  ACB354_RS02805 (ACB354_02805) - 520993..522147 (+) 1155 WP_011184826.1 class I SAM-dependent RNA methyltransferase -
  ACB354_RS02810 (ACB354_02810) - 522161..523630 (+) 1470 WP_011184825.1 cell division site-positioning protein MapZ family protein -
  ACB354_RS02815 (ACB354_02815) - 523775..524257 (-) 483 WP_002988938.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=929959 ACB354_RS02785 WP_002983622.1 518896..519504(-) (recU) [Streptococcus pyogenes strain Isolate 28]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=929959 ACB354_RS02785 WP_002983622.1 518896..519504(-) (recU) [Streptococcus pyogenes strain Isolate 28]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTATTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5