Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACB329_RS06880 Genome accession   NZ_CP167003
Coordinates   1344782..1345381 (+) Length   199 a.a.
NCBI ID   WP_010922551.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 29     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1339782..1350381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB329_RS06850 (ACB329_06855) - 1340029..1340511 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  ACB329_RS06855 (ACB329_06860) - 1340656..1342125 (-) 1470 WP_011285659.1 cell division site-positioning protein MapZ family protein -
  ACB329_RS06860 (ACB329_06865) - 1342139..1343293 (-) 1155 WP_010922549.1 class I SAM-dependent RNA methyltransferase -
  ACB329_RS06870 (ACB329_06875) gpsB 1343738..1344064 (-) 327 WP_002983626.1 cell division regulator GpsB -
  ACB329_RS06875 (ACB329_06880) - 1344186..1344701 (-) 516 WP_010922550.1 DUF1273 domain-containing protein -
  ACB329_RS06880 (ACB329_06885) recU 1344782..1345381 (+) 600 WP_010922551.1 Holliday junction resolvase RecU Machinery gene
  ACB329_RS06885 (ACB329_06890) pbp1a 1345368..1347533 (+) 2166 WP_009880659.1 penicillin-binding protein PBP1A -
  ACB329_RS06890 (ACB329_06895) pepC 1348000..1349337 (-) 1338 WP_002983616.1 aminopeptidase C -
  ACB329_RS06895 (ACB329_06900) nadE 1349522..1350346 (-) 825 WP_010922552.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22999.52 Da        Isoelectric Point: 9.7922

>NTDB_id=929889 ACB329_RS06880 WP_010922551.1 1344782..1345381(+) (recU) [Streptococcus pyogenes strain Isolate 29]
MVNYPHNLIRQKVSSVQKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQIDNGS
KSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=929889 ACB329_RS06880 WP_010922551.1 1344782..1345381(+) (recU) [Streptococcus pyogenes strain Isolate 29]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAAATAAGGTGGACTTCGCCAATAG
AGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTCACAAAAAAC
CTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTTAGACAAGCT
TCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAAAACAGCTAT
GCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCTTTGTCCTTC
TTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGATAATGGCAGT
AAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCCTTATTTAAA
CATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

98.995

0.508