Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   MWM05_RS11045 Genome accession   NZ_AP025593
Coordinates   2040019..2042052 (+) Length   677 a.a.
NCBI ID   WP_244362726.1    Uniprot ID   -
Organism   Thermus brockianus strain SNM4-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2035019..2047052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM05_RS11005 (TbrSNM41_21700) - 2035122..2035595 (+) 474 WP_071677026.1 hypothetical protein -
  MWM05_RS11010 (TbrSNM41_21710) pfkA 2035563..2036531 (-) 969 WP_244362716.1 6-phosphofructokinase -
  MWM05_RS11015 (TbrSNM41_21720) rsmI 2036528..2037325 (-) 798 WP_244362718.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MWM05_RS11020 (TbrSNM41_21730) - 2037327..2037821 (-) 495 WP_071677023.1 TFIIB-type zinc ribbon-containing protein -
  MWM05_RS11025 (TbrSNM41_21740) - 2037896..2038423 (-) 528 WP_071677022.1 inorganic diphosphatase -
  MWM05_RS11030 (TbrSNM41_21750) - 2038434..2039063 (-) 630 WP_244362720.1 glycerophosphodiester phosphodiesterase -
  MWM05_RS11035 (TbrSNM41_21760) - 2039086..2039751 (+) 666 WP_244362722.1 YcxB family protein -
  MWM05_RS11040 (TbrSNM41_21770) comEA 2039724..2040032 (+) 309 WP_244362724.1 ComEA family DNA-binding protein Machinery gene
  MWM05_RS11045 (TbrSNM41_21780) comA/comEC 2040019..2042052 (+) 2034 WP_244362726.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MWM05_RS11050 (TbrSNM41_21790) - 2042040..2042846 (-) 807 WP_244362728.1 ParB/RepB/Spo0J family partition protein -
  MWM05_RS11055 (TbrSNM41_21800) soj 2042830..2043579 (-) 750 WP_071677018.1 chromosome-partitioning ATPase Soj -
  MWM05_RS11060 (TbrSNM41_21810) rsmG 2043573..2044298 (-) 726 WP_244362730.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 72059.63 Da        Isoelectric Point: 10.2159

>NTDB_id=92946 MWM05_RS11045 WP_244362726.1 2040019..2042052(+) (comA/comEC) [Thermus brockianus strain SNM4-1]
MSAPRGGLGLGLGLGGVLGALGLLYPWALLLALPLLPLFRLPLAAGLALVLLRGFLFPLPEPPYGKRLEGVFAVRGGFAS
AEGYRLYVRHYPPLPDGVYRLVGYIAPPETRRNPGGFDQGTWLRSLGVRGVFHVEQKEALAPLPDPREAWRRRLVQGLSP
PVAELAEGLVLGDKEGLEAAYAWFQKAGLAHLLALSGLHVGFLLGAVLVLPLGRWRYLLALLLLPFYLWLAGPSPSLVRA
SLMAGLSLLGLFLGLGTAGVLQALGLALFLQLLLAPHALLSLGLQLSYLAVLGLALVLPALERPSGLRGYVASALAATLA
AQALLVPLLLHRFGFLPLLSPLTNLLALPLVALLVPLGFLKLFLGGLLAPLAEPLGQALLGLAQMGAKGPLLRWGEISPL
GFALYYLGLLPLLAALHRKIPWRKALLLTSLPILASLLAAWPKPLDLHLLDVGQGDALLARMGGAEVLVDGGRSEQAEKL
LRALRALGIEDLELLVATHPDADHAGSLPQVVAELPIGLALLSPAFPQDHPLVQALKAKGVPTLYPGAGSRFRVGKGEVR
VLWPARLSRDENRDGLALLLDFGRGQALLLADLPVEVERALEVGPVDVLKVSHHGSRTGTSETLVSQAKPKVALIGVGKN
PFNHPHPEVLKRLEGRGVQVFRTDRDGAVRVLFGYAW

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=92946 MWM05_RS11045 WP_244362726.1 2040019..2042052(+) (comA/comEC) [Thermus brockianus strain SNM4-1]
ATGTCCGCCCCTAGGGGAGGCCTGGGCTTAGGGCTTGGCCTAGGGGGTGTCCTGGGGGCGTTAGGGCTTCTCTACCCTTG
GGCCCTCCTCCTCGCCCTGCCCCTTCTCCCCCTCTTCCGCCTGCCCCTGGCGGCCGGGCTCGCTTTGGTGCTCCTGCGCG
GGTTCCTCTTCCCCCTCCCCGAGCCCCCCTATGGGAAGAGGCTGGAGGGGGTCTTTGCCGTGCGGGGCGGGTTTGCCTCC
GCCGAGGGGTACCGCCTTTACGTGCGCCACTACCCACCCCTTCCCGACGGGGTTTACCGCCTCGTTGGGTACATCGCCCC
GCCCGAAACCAGGCGCAACCCCGGGGGGTTTGACCAAGGGACCTGGCTCCGCTCCTTGGGGGTGCGGGGGGTGTTTCACG
TGGAACAGAAGGAGGCGCTAGCCCCTTTGCCCGACCCCCGGGAGGCCTGGCGAAGGCGGCTCGTCCAGGGGCTCTCCCCG
CCCGTGGCGGAGCTCGCCGAGGGCCTCGTCCTGGGGGACAAGGAGGGCCTCGAGGCGGCCTACGCCTGGTTTCAGAAAGC
AGGCCTCGCCCACCTCCTCGCCCTTTCGGGCCTCCACGTGGGCTTTTTGCTGGGGGCGGTCCTCGTCCTCCCTTTAGGGC
GGTGGCGCTACCTCCTGGCCCTTCTCCTCCTGCCCTTTTACCTATGGCTTGCCGGGCCAAGCCCCTCCCTGGTGCGGGCA
AGCCTCATGGCGGGGCTCTCCCTCCTAGGGCTTTTCCTGGGCCTGGGAACGGCCGGGGTGCTCCAGGCCCTGGGCCTCGC
CCTCTTCCTCCAGCTCCTCCTCGCTCCCCACGCCCTTCTAAGCCTAGGCCTGCAGCTCTCCTACCTAGCGGTCCTGGGCT
TGGCCCTCGTCCTCCCTGCCCTAGAACGGCCTTCAGGGCTTCGAGGCTACGTGGCCAGCGCCCTGGCGGCCACCCTGGCC
GCCCAAGCCCTCCTCGTCCCCCTCCTCCTCCACCGCTTCGGCTTCCTGCCCCTCCTCTCGCCCCTCACCAACCTCCTCGC
CCTCCCCCTGGTGGCCCTCCTGGTCCCCTTGGGGTTTCTCAAGCTCTTCCTGGGGGGGCTCCTCGCCCCCCTAGCGGAAC
CCTTGGGGCAAGCCCTCTTGGGCCTCGCCCAGATGGGCGCCAAGGGGCCCCTCTTGAGATGGGGGGAGATCTCCCCTTTG
GGCTTCGCCCTCTACTACCTGGGGCTCCTTCCCCTCCTCGCCGCCCTTCACCGCAAGATTCCCTGGCGCAAGGCCCTCCT
CCTCACCTCCCTCCCCATCCTCGCCAGCCTCCTCGCCGCCTGGCCCAAACCCCTGGACCTCCACCTCCTGGACGTGGGCC
AGGGGGACGCCCTCCTCGCCCGCATGGGCGGGGCGGAGGTCTTGGTGGACGGTGGGCGGAGCGAGCAGGCGGAAAAGCTC
CTAAGGGCCCTCCGCGCCCTGGGGATAGAGGACCTAGAGCTTCTCGTGGCCACCCATCCCGACGCCGACCACGCGGGGAG
CCTGCCCCAGGTGGTGGCCGAGCTTCCCATAGGCCTCGCCCTCCTCTCCCCCGCCTTCCCCCAGGACCACCCCCTGGTCC
AGGCCCTAAAGGCCAAGGGTGTGCCCACCCTCTATCCAGGAGCGGGAAGCCGCTTCCGGGTGGGGAAGGGGGAGGTGCGG
GTCCTCTGGCCCGCCCGCCTGAGCCGTGACGAAAACCGGGATGGCCTCGCCCTCCTCCTGGACTTTGGCCGAGGCCAGGC
CCTCCTCCTCGCCGATCTCCCCGTGGAGGTGGAAAGGGCCCTCGAGGTAGGCCCGGTGGACGTCCTTAAGGTGAGCCACC
ACGGCTCCCGCACGGGCACCTCCGAAACCCTGGTTTCCCAGGCCAAGCCCAAGGTCGCCTTGATCGGCGTGGGCAAGAAC
CCTTTCAACCACCCCCACCCGGAGGTCCTAAAGCGGCTTGAGGGGCGCGGGGTCCAGGTCTTCCGCACCGACCGGGATGG
GGCCGTGCGGGTCCTTTTCGGCTACGCCTGGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(169-418)

Metallo-beta-lactamase superfamily (Lactamase_B)

(452-635)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

71.684

99.114

0.71

Multiple sequence alignment