Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V1497_RS11680 Genome accession   NZ_CP143541
Coordinates   2232213..2233940 (-) Length   575 a.a.
NCBI ID   WP_349407729.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. SCS-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2227213..2238940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1497_RS11660 (V1497_11670) - 2229165..2229413 (+) 249 WP_349407725.1 DUF2627 family protein -
  V1497_RS11665 (V1497_11675) yvfG 2229413..2229622 (+) 210 WP_349407726.1 protein YvfG -
  V1497_RS11670 (V1497_11680) spo0A 2229709..2230503 (-) 795 WP_349407727.1 sporulation transcription factor Spo0A -
  V1497_RS11675 (V1497_11685) spoIVB 2230778..2232091 (-) 1314 WP_349407728.1 SpoIVB peptidase -
  V1497_RS11680 (V1497_11690) recN 2232213..2233940 (-) 1728 WP_349407729.1 DNA repair protein RecN Machinery gene
  V1497_RS11685 (V1497_11695) ahrC 2233959..2234408 (-) 450 WP_349410809.1 transcriptional regulator AhrC/ArgR -
  V1497_RS11690 (V1497_11700) - 2234557..2235387 (-) 831 WP_349407730.1 TlyA family RNA methyltransferase -
  V1497_RS11695 (V1497_11705) dxs 2235389..2237281 (-) 1893 WP_349407731.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V1497_RS11700 (V1497_11710) - 2237291..2237905 (-) 615 WP_349407732.1 hypothetical protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65317.31 Da        Isoelectric Point: 4.8680

>NTDB_id=929370 V1497_RS11680 WP_349407729.1 2232213..2233940(-) (recN) [Pseudalkalibacillus sp. SCS-8]
MLAELSIRHFAIIEEVTVPFEDGLTVLTGETGAGKSIIIDAIGLLIGGRGSSEYVRHGTDRAEIEGLFYVPEAHPVIRKT
QEQGIEVSDGMIVLKRDITNSGKSICRINGKLVTLAILREIGQTLIDIHGQHEHQFLLQSDKHLSLLDQYLSSDLERTKQ
EYMQLYKRYQDTQAQLKQLTENEQEMAHRIDLIQYQLEEIDQAKLQPNEDEELMEEKQKLNNFERLYQAVNDAYQALYGD
GKGIDILGLAMSHLENVSDYDQALKPIEETITNTYYALEDASHQLRDYVDQMEFDPERLAVIEDRLHEINTLKRKYGNTV
EEILEYSSRIEEELHTFTNKDDRIKQLNDDLTEIGKDLYLEAEQLSKLRKQAAKKLEKKIHQQLKDLYMAKTTFEVSFTP
LSGSSNIKIDKDGHEIQLNKNGMDDVEFLISTNPGEPLKPLVKIASGGELSRIILALKAIFSNQQEVASIIFDEVDTGVS
GRVAQAIAEKIQKLSVGSQVLCITHLPQVAAMADRHLYIQKKIKGDRTLTLVKPLPFDEKVKEIARMISGVEITDLTKRH
AKEMIEFADEVKITS

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=929370 V1497_RS11680 WP_349407729.1 2232213..2233940(-) (recN) [Pseudalkalibacillus sp. SCS-8]
ATGCTTGCGGAATTATCGATAAGACATTTTGCCATTATTGAAGAAGTTACCGTTCCGTTCGAGGATGGATTGACCGTATT
GACTGGTGAAACAGGTGCTGGTAAGTCCATCATCATTGATGCAATCGGCTTGTTAATTGGGGGTCGAGGCTCTTCTGAGT
ATGTTCGACATGGAACGGACAGGGCAGAAATAGAAGGCTTGTTTTATGTCCCTGAAGCGCATCCTGTCATAAGGAAGACG
CAAGAGCAGGGAATTGAAGTGTCGGACGGTATGATTGTATTGAAGCGAGATATCACAAACTCAGGAAAAAGCATCTGCCG
TATCAACGGAAAGTTGGTCACTTTAGCGATTTTAAGGGAAATTGGTCAAACACTCATTGATATTCATGGACAGCATGAGC
ATCAATTTCTTTTGCAAAGCGATAAACACTTGAGTTTATTAGACCAATATCTTTCCTCCGACCTTGAACGGACGAAGCAG
GAATATATGCAGCTTTACAAGCGCTATCAAGATACACAAGCACAGCTTAAGCAGCTGACTGAAAATGAGCAGGAAATGGC
ACATCGTATTGATTTGATTCAATATCAGCTTGAAGAAATCGACCAAGCGAAGCTTCAACCGAATGAAGATGAAGAATTGA
TGGAAGAGAAACAAAAGCTCAATAACTTCGAAAGGCTTTACCAGGCTGTCAATGATGCATACCAGGCCCTTTATGGGGAC
GGAAAAGGCATAGATATCCTCGGCCTTGCCATGAGCCATCTTGAAAACGTTTCAGATTATGATCAGGCATTGAAGCCGAT
TGAGGAGACGATTACGAATACGTACTATGCACTGGAAGACGCTTCACACCAGTTAAGGGATTATGTCGATCAAATGGAAT
TCGACCCGGAGCGTTTAGCGGTCATTGAAGATCGTTTACACGAGATCAATACGTTGAAAAGAAAATATGGGAACACAGTT
GAGGAAATTTTAGAATACAGCTCTCGTATTGAGGAAGAACTCCATACATTTACAAATAAAGACGACCGAATTAAACAATT
GAATGATGATCTTACTGAGATCGGAAAAGATCTATACTTAGAGGCTGAACAATTAAGTAAATTGAGGAAGCAGGCTGCAA
AAAAACTCGAGAAGAAAATCCACCAGCAATTGAAGGATCTCTACATGGCGAAAACCACGTTCGAGGTGTCCTTTACACCA
TTGAGCGGGTCTTCAAATATCAAAATTGACAAAGACGGACACGAGATACAGCTTAACAAAAACGGTATGGACGATGTGGA
ATTCCTCATATCGACCAATCCAGGTGAACCGTTGAAACCATTGGTCAAAATCGCTTCAGGTGGTGAACTTTCGAGAATCA
TCCTTGCGTTGAAAGCCATCTTTTCCAATCAACAGGAAGTGGCTTCCATCATTTTTGATGAAGTCGATACAGGTGTAAGT
GGAAGAGTTGCACAAGCGATCGCTGAAAAAATACAGAAGCTTTCTGTCGGATCCCAGGTTCTTTGTATCACACACTTACC
ACAGGTTGCAGCGATGGCTGACCGGCACCTTTACATACAGAAAAAGATCAAAGGTGATCGTACGTTGACACTCGTCAAAC
CATTGCCATTCGATGAAAAAGTAAAAGAGATCGCAAGGATGATTTCAGGTGTTGAAATCACTGATCTAACAAAGCGGCAT
GCTAAAGAAATGATCGAATTTGCAGACGAAGTAAAAATTACCTCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.348

100

0.603