Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AB3239_RS09335 Genome accession   NZ_CP166831
Coordinates   1782505..1782936 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain TE3T-UV25     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777505..1787936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS09315 (AB3239_09315) spoVS 1778067..1778327 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  AB3239_RS09320 (AB3239_09320) tdh 1778592..1779635 (+) 1044 WP_128441634.1 L-threonine 3-dehydrogenase -
  AB3239_RS09325 (AB3239_09325) kbl 1779648..1780826 (+) 1179 WP_021479272.1 glycine C-acetyltransferase -
  AB3239_RS09330 (AB3239_09330) miaB 1780974..1782503 (+) 1530 WP_049140040.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AB3239_RS09335 (AB3239_09335) ymcA 1782505..1782936 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  AB3239_RS09340 (AB3239_09340) cotE 1783190..1783735 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  AB3239_RS09345 (AB3239_09345) hexA 1783868..1786444 (+) 2577 WP_370957404.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=929084 AB3239_RS09335 WP_003231834.1 1782505..1782936(+) (ymcA) [Bacillus subtilis strain TE3T-UV25]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=929084 AB3239_RS09335 WP_003231834.1 1782505..1782936(+) (ymcA) [Bacillus subtilis strain TE3T-UV25]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1