Detailed information NTG0929023

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AB3239_RS01615
• Genome accession: NZ_CP166831
• Coordinates: 292936..294057 (+)
• Length: 373 a.a.
• NCBI ID: WP_003234740.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain TE3T-UV25
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 287936..299057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3239_RS01590 (AB3239_01590)	ycdA	287942..289006 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
AB3239_RS01595 (AB3239_01595)	-	289007..289159 (-)	153	WP_021481864.1	hypothetical protein	-
AB3239_RS01600 (AB3239_01600)	ycdB	289333..290754 (+)	1422	WP_370957150.1	YcdB/YcdC domain-containing protein	-
AB3239_RS01605 (AB3239_01605)	ycdC	290941..292302 (+)	1362	WP_124073441.1	YcdB/YcdC domain-containing protein	-
AB3239_RS01610 (AB3239_01610)	cwlK	292310..292813 (-)	504	WP_124073440.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
AB3239_RS01615 (AB3239_01615)	rapF	292936..294057 (+)	1122	WP_003234740.1	response regulator aspartate phosphatase RapJ	Regulator
AB3239_RS01620 (AB3239_01620)	ycdF	294165..294941 (+)	777	WP_003234739.1	SDR family oxidoreductase	-
AB3239_RS01625 (AB3239_01625)	ycdG	294966..296651 (+)	1686	WP_046160023.1	alpha-glucosidase	-
AB3239_RS01630 (AB3239_01630)	znuA	296839..297798 (+)	960	WP_038828539.1	metal ABC transporter substrate-binding protein	-
AB3239_RS01635 (AB3239_01635)	znuC	297853..298548 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44427.31 Da
• Isoelectric Point: 4.8344

>NTDB_id=929023 AB3239_RS01615 WP_003234740.1 292936..294057(+) (rapF) [Bacillus subtilis strain TE3T-UV25]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGNGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=929023 AB3239_RS01615 WP_003234740.1 292936..294057(+) (rapF) [Bacillus subtilis strain TE3T-UV25]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCATTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATATTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAAGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAACGGTGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCAGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405