Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VXM68_RS07985 Genome accession   NZ_CP142884
Coordinates   1913525..1914550 (-) Length   341 a.a.
NCBI ID   WP_209577765.1    Uniprot ID   -
Organism   Sphingobacterium sp. R2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1908525..1919550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXM68_RS07955 (VXM68_07915) - 1908787..1908996 (+) 210 WP_293952932.1 hypothetical protein -
  VXM68_RS07960 (VXM68_07920) - 1908993..1909334 (+) 342 WP_294185932.1 tRNA-binding protein -
  VXM68_RS07965 (VXM68_07925) - 1909344..1909811 (+) 468 WP_294185930.1 nucleoside deaminase -
  VXM68_RS07970 (VXM68_07930) - 1909911..1910519 (+) 609 WP_293884679.1 superoxide dismutase -
  VXM68_RS07975 (VXM68_07935) msrA 1910766..1911419 (+) 654 WP_294185926.1 peptide-methionine (S)-S-oxide reductase MsrA -
  VXM68_RS07980 (VXM68_07940) pruA 1911579..1913216 (+) 1638 WP_312332479.1 L-glutamate gamma-semialdehyde dehydrogenase -
  VXM68_RS07985 (VXM68_07945) recA 1913525..1914550 (-) 1026 WP_209577765.1 recombinase RecA Machinery gene
  VXM68_RS07990 (VXM68_07950) nth 1914619..1915296 (-) 678 WP_293953263.1 endonuclease III -
  VXM68_RS07995 (VXM68_07955) - 1915459..1915650 (-) 192 WP_209577767.1 hypothetical protein -
  VXM68_RS08000 (VXM68_07960) - 1915731..1917356 (-) 1626 WP_367210954.1 S8 family serine peptidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36735.09 Da        Isoelectric Point: 4.7460

>NTDB_id=927454 VXM68_RS07985 WP_209577765.1 1913525..1914550(-) (recA) [Sphingobacterium sp. R2]
MSNTDKLKALQLTLDKLEKNFGKGSIMKLGDTAVEPIEAISTGSLGLDIALGIGGVPKGRIIEIYGPESSGKTTLATHIV
AEAQKKGGIAAIIDAEHAFDKYYAQKLGVDVENLLISQPDNGEQGLEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMG
DSKMGLQARLMSQALRKLTGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRTSQIKDSDEVSGN
RVKVKIVKNKVAPPFRIAEFDIIFGEGISKVGEIIDLGVEYGIIKKAGSWFSYGDTKLGQGRDAVKSLLFDNPDLMDELE
GKIRAEVTGEDPMLNVEENED

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=927454 VXM68_RS07985 WP_209577765.1 1913525..1914550(-) (recA) [Sphingobacterium sp. R2]
ATGAGCAACACAGATAAACTAAAAGCGTTACAGCTGACGTTAGATAAATTAGAGAAGAACTTTGGAAAAGGTTCAATTAT
GAAATTGGGAGATACTGCTGTTGAGCCTATCGAGGCTATTTCTACAGGATCTCTTGGTTTGGATATCGCCTTAGGGATCG
GTGGTGTACCAAAAGGCCGTATCATTGAAATATATGGACCTGAATCTTCAGGTAAAACTACTTTAGCGACACACATTGTT
GCCGAAGCACAGAAAAAAGGCGGTATTGCAGCTATCATCGATGCTGAACATGCTTTTGATAAATACTACGCTCAAAAATT
AGGTGTAGATGTGGAGAACTTATTGATTTCTCAACCAGATAACGGTGAGCAAGGTTTAGAAATTGCGGATAACCTAATCC
GTTCTGGAGCAATCGACGTCATTGTTATTGACTCCGTGGCAGCTTTGGTACCAAAAGGCGAAATCGAAGGTGAAATGGGC
GACTCTAAGATGGGACTTCAAGCTCGTTTAATGTCTCAAGCTTTACGTAAGCTGACGGGTACAATTTCAAAAACAAACTG
CTGTTGTATTTTCATTAACCAGCTGCGCGAAAAAATTGGTGTGATGTTTGGTAACCCAGAAACGACAACGGGTGGTAATG
CACTCAAATTCTATTCTTCTGTTCGTTTAGATATCCGTCGCACATCACAGATCAAAGACTCTGATGAAGTATCGGGTAAC
CGCGTAAAAGTAAAGATTGTAAAAAATAAAGTAGCCCCTCCATTCCGTATCGCAGAATTTGATATCATTTTTGGTGAAGG
TATCTCTAAGGTCGGTGAAATCATTGATCTGGGTGTTGAATACGGTATCATCAAAAAGGCAGGCTCTTGGTTTAGCTATG
GTGACACGAAACTAGGACAAGGCCGGGATGCTGTCAAATCCTTGTTATTCGACAACCCCGATTTAATGGATGAACTTGAG
GGAAAAATCCGCGCCGAGGTAACAGGAGAAGATCCGATGCTTAACGTTGAGGAAAACGAAGACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

70.695

97.067

0.686
  recA Ralstonia pseudosolanacearum GMI1000

68.77

92.962

0.639
  recA Neisseria gonorrhoeae strain FA1090

67.081

94.428

0.633
  recA Neisseria gonorrhoeae MS11

67.081

94.428

0.633
  recA Neisseria gonorrhoeae MS11

67.081

94.428

0.633
  recA Acinetobacter baumannii D1279779

62.242

99.413

0.619
  recA Helicobacter pylori strain NCTC11637

64.724

95.601

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.315

98.827

0.616
  recA Glaesserella parasuis strain SC1401

65.831

93.548

0.616
  recA Helicobacter pylori 26695

64.417

95.601

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

94.135

0.61
  recA Acinetobacter baylyi ADP1

64.396

94.721

0.61
  recA Pseudomonas stutzeri DSM 10701

63.467

94.721

0.601
  recA Streptococcus mitis NCTC 12261

61.162

95.894

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

95.308

0.587
  recA Streptococcus pneumoniae Rx1

61.043

95.601

0.584
  recA Streptococcus pneumoniae D39

61.043

95.601

0.584
  recA Streptococcus pneumoniae TIGR4

61.043

95.601

0.584
  recA Streptococcus pneumoniae R6

61.043

95.601

0.584
  recA Lactococcus lactis subsp. cremoris KW2

61.801

94.428

0.584
  recA Streptococcus mitis SK321

60.856

95.894

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.875

93.842

0.581
  recA Vibrio cholerae strain A1552

61.875

93.842

0.581
  recA Streptococcus pyogenes NZ131

61.111

95.015

0.581
  recA Streptococcus mutans UA159

60.123

95.601

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.407

95.015

0.545