Detailed information NTG0092720

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8575_RS06400
• Genome accession: NZ_AP028336
• Coordinates: 1221186..1222145 (+)
• Length: 319 a.a.
• NCBI ID: WP_317653969.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-10190
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1216186..1227145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8575_RS06375 (B10190_12520)	-	1216535..1217557 (-)	1023	WP_002891861.1	hypothetical protein	-
R8575_RS06380 (B10190_12530)	-	1217628..1218401 (+)	774	WP_002891857.1	glycosyltransferase family 25 protein	-
R8575_RS06385 (B10190_12540)	wlaTB	1218394..1219350 (+)	957	WP_002860237.1	class E lipooligosaccharide biosynthesis protein WlaTB	-
R8575_RS06390 (B10190_12550)	wlaTC	1219347..1220306 (+)	960	WP_002860238.1	class E lipooligosaccharide biosynthesis protein WlaTC	-
R8575_RS06395 (B10190_12560)	-	1220309..1221127 (-)	819	WP_002876193.1	glycosyltransferase family 2 protein	-
R8575_RS06400 (B10190_12570)	waaF	1221186..1222145 (+)	960	WP_317653969.1	lipopolysaccharide heptosyltransferase II	Regulator
R8575_RS06405 (B10190_12580)	gmhA	1222126..1222686 (-)	561	WP_002876196.1	D-sedoheptulose 7-phosphate isomerase	-
R8575_RS06410 (B10190_12590)	rfaE1	1222683..1224068 (-)	1386	WP_002901184.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8575_RS06415 (B10190_12600)	rfaD	1224061..1225014 (-)	954	WP_002860242.1	ADP-glyceromanno-heptose 6-epimerase	-
R8575_RS06420 (B10190_12610)	gmhB	1225015..1225576 (-)	562	Protein_1252	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8575_RS06425 (B10190_12620)	-	1225657..1225959 (+)	303	WP_002852762.1	c-type cytochrome	-
R8575_RS06430 (B10190_12630)	ccoS	1225982..1226188 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36635.13 Da
• Isoelectric Point: 10.2870

>NTDB_id=92720 R8575_RS06400 WP_317653969.1 1221186..1222145(+) (waaF) [Campylobacter jejuni strain BCH-10190]
MKIFIHLPTWLGDAVMVSPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=92720 R8575_RS06400 WP_317653969.1 1221186..1222145(+) (waaF) [Campylobacter jejuni strain BCH-10190]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGTTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	93.711	99.687	0.934