Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   AB6W33_RS11375 Genome accession   NZ_CP163561
Coordinates   2202139..2202729 (-) Length   196 a.a.
NCBI ID   WP_000272487.1    Uniprot ID   Q8DWW6
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2197139..2207729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS11340 (AB6W33_11335) - 2197159..2197476 (-) 318 WP_000940932.1 DUF1292 domain-containing protein -
  AB6W33_RS11345 (AB6W33_11340) ruvX 2197502..2197921 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  AB6W33_RS11350 (AB6W33_11345) - 2197921..2198187 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  AB6W33_RS11355 (AB6W33_11350) spx 2198389..2198787 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  AB6W33_RS11360 (AB6W33_11355) recA 2199003..2200142 (-) 1140 WP_001085741.1 recombinase RecA Machinery gene
  AB6W33_RS11365 (AB6W33_11360) - 2200216..2201476 (-) 1261 Protein_2170 competence/damage-inducible protein A -
  AB6W33_RS11370 (AB6W33_11365) - 2201565..2202116 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  AB6W33_RS11375 (AB6W33_11370) ruvA 2202139..2202729 (-) 591 WP_000272487.1 Holliday junction branch migration protein RuvA Machinery gene
  AB6W33_RS11380 (AB6W33_11375) - 2202731..2203963 (-) 1233 WP_000657476.1 MFS transporter -
  AB6W33_RS11385 (AB6W33_11380) hexB 2203995..2205968 (-) 1974 WP_000034617.1 DNA mismatch repair endonuclease MutL Machinery gene
  AB6W33_RS11390 (AB6W33_11385) - 2206194..2206397 (+) 204 WP_000191849.1 cold-shock protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21729.00 Da        Isoelectric Point: 5.7488

>NTDB_id=926844 AB6W33_RS11375 WP_000272487.1 2202139..2202729(-) (ruvA) [Streptococcus agalactiae strain GBS-B4009]
MYDYIKGKLSKITAKFIVVETAGLGYMIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=926844 AB6W33_RS11375 WP_000272487.1 2202139..2202729(-) (ruvA) [Streptococcus agalactiae strain GBS-B4009]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACGGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACAT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGCTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DWW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408