Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   VSX74_RS03985 Genome accession   NZ_CP142773
Coordinates   772170..773432 (+) Length   420 a.a.
NCBI ID   WP_002833611.1    Uniprot ID   A0AAU7NPF0
Organism   Pediococcus pentosaceus strain VHProbi M59     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 767170..778432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSX74_RS03960 (VSX74_03960) tsf 768026..768904 (+) 879 WP_002833606.1 translation elongation factor Ts -
  VSX74_RS03965 (VSX74_03965) pyrH 769058..769783 (+) 726 WP_002833607.1 UMP kinase -
  VSX74_RS03970 (VSX74_03970) frr 769783..770343 (+) 561 WP_002833608.1 ribosome recycling factor -
  VSX74_RS03975 (VSX74_03975) - 770601..771350 (+) 750 WP_011673316.1 isoprenyl transferase -
  VSX74_RS03980 (VSX74_03980) - 771361..772146 (+) 786 WP_029257928.1 phosphatidate cytidylyltransferase -
  VSX74_RS03985 (VSX74_03985) eeP 772170..773432 (+) 1263 WP_002833611.1 RIP metalloprotease RseP Regulator
  VSX74_RS03990 (VSX74_03990) - 773460..775175 (+) 1716 WP_002833612.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46334.92 Da        Isoelectric Point: 9.6829

>NTDB_id=926751 VSX74_RS03985 WP_002833611.1 772170..773432(+) (eeP) [Pediococcus pentosaceus strain VHProbi M59]
MITTIITFIVVFLILVVVHEYGHFVAAKKSGILVREFSIGMGPKIVDLKRNGTTYTLRILPIGGYVRMAGLDEQEDELKA
GQHVTLTTDNTGQVTIINTSSKVQNLMGIPVDVTSFDLQDKLFIEGYENGNEDEVKHFEIDHDASIVESDGTEVRIAPRD
VQFQSAKIWQRLITNFAGPFNNFVLAIVVFAIMGVMQGAVPANTNQVQVVENGVAQKAGIKNNDRIVRVEGQKTDNWSQL
SKAVSARPNQKTTLEVLRQKQTKKITLTPKLASNGSKKVGMIGVQSSMTTNLGKRVLYGFTGTWQMAKSLFTALGQMLHG
FSLNDLGGPVAIYATTSQATHQGFMSVLYVLGFLSLNLGIVNLLPIPALDGGKILLNLVEMIRRKPLKVETENVITLIGF
GFLMILMLLVTWNDIQRYFF

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=926751 VSX74_RS03985 WP_002833611.1 772170..773432(+) (eeP) [Pediococcus pentosaceus strain VHProbi M59]
ATGATAACTACGATTATTACCTTTATTGTTGTATTTTTAATTTTAGTTGTTGTCCATGAGTATGGGCATTTTGTTGCTGC
TAAAAAGTCCGGTATTTTAGTTCGTGAATTTTCAATTGGGATGGGTCCTAAAATTGTTGATTTGAAGCGTAATGGAACTA
CGTATACTTTACGGATTCTTCCCATTGGTGGTTATGTTCGAATGGCGGGACTCGATGAACAAGAAGATGAATTGAAAGCG
GGACAACATGTTACATTAACCACGGATAATACTGGACAAGTGACGATTATTAATACTTCTAGTAAAGTTCAAAATTTGAT
GGGCATTCCAGTTGATGTAACCAGTTTTGACTTACAAGATAAATTATTCATTGAAGGTTATGAAAATGGTAACGAAGACG
AAGTTAAACATTTTGAAATTGATCATGATGCATCGATAGTCGAATCCGACGGGACAGAAGTTCGAATTGCACCGCGTGAT
GTTCAATTTCAATCTGCTAAGATTTGGCAGCGACTAATTACTAATTTTGCTGGACCATTTAATAATTTTGTTTTGGCCAT
CGTTGTTTTTGCGATAATGGGAGTTATGCAGGGAGCAGTTCCGGCTAATACTAACCAAGTACAAGTCGTTGAAAATGGTG
TTGCTCAAAAAGCAGGAATTAAAAATAATGATCGTATTGTTAGAGTTGAAGGACAAAAAACAGATAATTGGAGTCAATTA
TCTAAGGCAGTTTCAGCTCGTCCAAATCAAAAAACGACTTTAGAAGTATTACGTCAAAAGCAAACAAAGAAAATCACATT
AACACCTAAGTTAGCAAGTAATGGTAGTAAAAAAGTGGGTATGATTGGTGTTCAATCATCCATGACAACTAATTTAGGTA
AGCGAGTTTTATATGGTTTCACTGGAACTTGGCAAATGGCTAAGAGTTTGTTTACCGCTTTAGGACAGATGCTACATGGC
TTTAGTTTGAATGATTTAGGCGGTCCTGTTGCAATTTATGCCACGACCTCTCAAGCCACCCATCAAGGCTTCATGTCAGT
GCTGTATGTGCTTGGTTTTCTATCCCTAAACTTGGGGATTGTTAACTTATTACCAATTCCAGCTTTGGATGGAGGAAAAA
TTCTCCTAAATCTCGTTGAAATGATTCGAAGAAAACCTTTAAAAGTTGAAACCGAAAATGTGATTACGCTAATTGGCTTT
GGATTTTTAATGATATTAATGCTGTTAGTTACTTGGAATGATATTCAAAGATACTTTTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(208-258)

Peptidase family M50 (Peptidase_M50)

(7-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

47.877

100

0.483
  eeP Streptococcus thermophilus LMG 18311

47.877

100

0.483