Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   AB5J87_RS23600 Genome accession   NZ_CP163520
Coordinates   5343200..5343688 (+) Length   162 a.a.
NCBI ID   WP_369379053.1    Uniprot ID   -
Organism   Streptomyces sp. cg36     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5338200..5348688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J87_RS23590 (AB5J87_23590) - 5340732..5341490 (+) 759 WP_369379050.1 hypothetical protein -
  AB5J87_RS23595 (AB5J87_23595) - 5341565..5342410 (+) 846 WP_369379052.1 DegV family protein -
  AB5J87_RS23600 (AB5J87_23600) comEA/celA/cilE 5343200..5343688 (+) 489 WP_369379053.1 helix-hairpin-helix domain-containing protein Machinery gene
  AB5J87_RS23605 (AB5J87_23605) - 5343685..5346405 (+) 2721 WP_369379055.1 ComEC/Rec2 family competence protein -
  AB5J87_RS23610 (AB5J87_23610) - 5347035..5347850 (+) 816 WP_369383649.1 YceI family protein -
  AB5J87_RS23615 (AB5J87_23615) - 5348080..5348328 (-) 249 WP_369379056.1 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 15833.77 Da        Isoelectric Point: 6.7266

>NTDB_id=926464 AB5J87_RS23600 WP_369379053.1 5343200..5343688(+) (comEA/celA/cilE) [Streptomyces sp. cg36]
MAGAGAAGAAPGGGIVVDVSGKVRRPGIHRLPTGSRVADALAAAGGVREGVDLTGLNRARVLTDGEQVAVGVPGAPPGVT
GSVPTGGGAASGAAGGAAGTPVSLNSASLDQLDALPGVGPVLAQHIVDYRVQHGGFRSVDELREVNGIGDRRFEDLQPLV
RP

Nucleotide


Download         Length: 489 bp        

>NTDB_id=926464 AB5J87_RS23600 WP_369379053.1 5343200..5343688(+) (comEA/celA/cilE) [Streptomyces sp. cg36]
GTGGCAGGAGCCGGAGCCGCCGGGGCCGCGCCCGGCGGCGGGATCGTGGTGGACGTCAGCGGCAAGGTGCGACGGCCGGG
CATCCACCGCCTGCCGACGGGCTCCCGGGTCGCCGACGCGCTGGCGGCGGCGGGAGGTGTACGGGAGGGAGTGGACCTGA
CCGGCCTCAACCGGGCACGCGTCCTCACGGACGGCGAACAGGTGGCCGTCGGGGTTCCCGGAGCGCCGCCGGGTGTCACC
GGGTCGGTCCCCACGGGCGGCGGCGCCGCTTCGGGCGCGGCGGGAGGGGCGGCGGGCACGCCCGTCAGCCTGAACTCCGC
CTCGCTGGACCAGTTGGACGCCCTGCCGGGCGTGGGCCCGGTGCTCGCCCAGCACATCGTCGACTACCGCGTCCAGCACG
GCGGCTTCCGGTCCGTCGACGAACTCCGCGAGGTCAACGGGATCGGCGACCGCCGCTTCGAAGACCTCCAGCCCTTGGTG
CGGCCGTGA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(16-68)

Helix-hairpin-helix motif (HHH_3)

(100-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

43.151

90.123

0.389
  comEA/celA/cilE Streptococcus pneumoniae Rx1

43.151

90.123

0.389
  comEA/celA/cilE Streptococcus pneumoniae D39

43.151

90.123

0.389
  comEA/celA/cilE Streptococcus pneumoniae R6

43.151

90.123

0.389
  comEA/celA/cilE Streptococcus mitis NCTC 12261

42.466

90.123

0.383
  comEA/celA/cilE Streptococcus mitis SK321

41.781

90.123

0.377