Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   VSY18_RS25970 Genome accession   NZ_CP142670
Coordinates   4966419..4967000 (+) Length   193 a.a.
NCBI ID   WP_001049162.1    Uniprot ID   A0A9W5QPC2
Organism   Bacillus albus strain YK87     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4961419..4972000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS25930 (VSY18_25930) - 4961948..4962208 (-) 261 WP_229200879.1 YxeA family protein -
  VSY18_RS25935 (VSY18_25935) - 4962414..4962620 (+) 207 WP_000216166.1 DUF1657 domain-containing protein -
  VSY18_RS25940 (VSY18_25940) - 4962714..4963199 (+) 486 WP_098520874.1 YhcN/YlaJ family sporulation lipoprotein -
  VSY18_RS25945 (VSY18_25945) spoVAC 4963229..4963705 (+) 477 WP_000095399.1 stage V sporulation protein AC -
  VSY18_RS25950 (VSY18_25950) spoVAD 4963706..4964722 (+) 1017 WP_000938954.1 stage V sporulation protein AD -
  VSY18_RS25955 (VSY18_25955) spoVAE 4964719..4965069 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  VSY18_RS25960 (VSY18_25960) - 4965081..4965287 (+) 207 WP_085312777.1 DUF1657 domain-containing protein -
  VSY18_RS25965 (VSY18_25965) - 4965308..4966177 (+) 870 WP_098345467.1 DUF421 domain-containing protein -
  VSY18_RS25970 (VSY18_25970) clpP 4966419..4967000 (+) 582 WP_001049162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  VSY18_RS25975 (VSY18_25975) - 4967396..4967644 (-) 249 WP_000250307.1 HPr family phosphocarrier protein -
  VSY18_RS25980 (VSY18_25980) whiA 4967668..4968618 (-) 951 WP_000006563.1 DNA-binding protein WhiA -
  VSY18_RS25985 (VSY18_25985) - 4968708..4969661 (-) 954 WP_048528171.1 gluconeogenesis factor YvcK family protein -
  VSY18_RS25990 (VSY18_25990) rapZ 4969665..4970546 (-) 882 WP_000138462.1 RNase adapter RapZ -
  VSY18_RS25995 (VSY18_25995) - 4970567..4971025 (-) 459 WP_001190080.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21419.67 Da        Isoelectric Point: 5.0423

>NTDB_id=926346 VSY18_RS25970 WP_001049162.1 4966419..4967000(+) (clpP) [Bacillus albus strain YK87]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=926346 VSY18_RS25970 WP_001049162.1 4966419..4967000(+) (clpP) [Bacillus albus strain YK87]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGCGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCTAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGATAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554