Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | U5897_RS01795 | Genome accession | NZ_CP142393 |
| Coordinates | 333729..334109 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836910.1 | Uniprot ID | A0AAQ1AB09 |
| Organism | Acinetobacter baumannii strain 38 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 328729..339109
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U5897_RS01765 (U5897_01765) | kdsB | 329632..330393 (+) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| U5897_RS01770 (U5897_01770) | - | 330405..331385 (+) | 981 | WP_001075418.1 | DNA polymerase III subunit delta' | - |
| U5897_RS01775 (U5897_01775) | - | 331397..331738 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| U5897_RS01780 (U5897_01780) | - | 331756..332529 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| U5897_RS01785 (U5897_01785) | - | 332567..333175 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| U5897_RS01790 (U5897_01790) | - | 333185..333739 (+) | 555 | WP_000841379.1 | type II secretion system protein | - |
| U5897_RS01795 (U5897_01795) | xcpV | 333729..334109 (+) | 381 | WP_000836910.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| U5897_RS01800 (U5897_01800) | xcpW | 334109..334810 (+) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| U5897_RS01805 (U5897_01805) | gspK | 334810..335769 (+) | 960 | WP_000301481.1 | type II secretion system minor pseudopilin GspK | - |
| U5897_RS01810 (U5897_01810) | - | 335999..336595 (+) | 597 | WP_000908450.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| U5897_RS01815 (U5897_01815) | ung | 336646..337359 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| U5897_RS01820 (U5897_01820) | - | 337356..338480 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| U5897_RS01825 (U5897_01825) | tadA | 338487..338990 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=925683 U5897_RS01795 WP_000836910.1 333729..334109(+) (xcpV) [Acinetobacter baumannii strain 38]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=925683 U5897_RS01795 WP_000836910.1 333729..334109(+) (xcpV) [Acinetobacter baumannii strain 38]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |