Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB5J48_RS18400 Genome accession   NZ_CP163433
Coordinates   4124229..4125641 (-) Length   470 a.a.
NCBI ID   WP_006129589.1    Uniprot ID   M3EBR0
Organism   Streptomyces sp. R17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4119229..4130641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J48_RS18375 (AB5J48_18375) - 4119388..4120038 (-) 651 WP_006129594.1 hypothetical protein -
  AB5J48_RS18380 (AB5J48_18380) - 4120026..4120565 (-) 540 WP_006129593.1 SigE family RNA polymerase sigma factor -
  AB5J48_RS18385 (AB5J48_18385) - 4120848..4121783 (-) 936 WP_006129592.1 A/G-specific adenine glycosylase -
  AB5J48_RS18390 (AB5J48_18390) - 4122060..4122950 (+) 891 WP_078592159.1 hypothetical protein -
  AB5J48_RS18395 (AB5J48_18395) disA 4123035..4124159 (-) 1125 WP_031020135.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J48_RS18400 (AB5J48_18400) radA 4124229..4125641 (-) 1413 WP_006129589.1 DNA repair protein RadA Machinery gene
  AB5J48_RS18405 (AB5J48_18405) - 4126353..4128155 (+) 1803 WP_006129588.1 sigma-70 family RNA polymerase sigma factor -
  AB5J48_RS18410 (AB5J48_18410) - 4128217..4129107 (-) 891 WP_369151621.1 hypothetical protein -
  AB5J48_RS18415 (AB5J48_18415) - 4129203..4130135 (+) 933 WP_086683400.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49772.84 Da        Isoelectric Point: 8.0182

>NTDB_id=925103 AB5J48_RS18400 WP_006129589.1 4124229..4125641(-) (radA) [Streptomyces sp. R17]
MAARTKTSKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAAPAVRTTAPGRVTTSALPIGQVDGRQATARSTGVPE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVTEVADIGDALRVLPRSRRREAPREQEDRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=925103 AB5J48_RS18400 WP_006129589.1 4124229..4125641(-) (radA) [Streptomyces sp. R17]
ATGGCTGCCCGTACCAAGACGTCCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGATGGCAGACGGCCAAGTGGCT
CGGGCGCTGTCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGTGCGGCGCCCGCCGTGCGGACGACCGCGCCGG
GGCGGGTCACCACGTCCGCGCTGCCCATCGGGCAGGTCGACGGGCGGCAGGCCACCGCCCGCTCCACGGGCGTGCCCGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTGGGCAAGTCCAC
CCTCCTGCTGGACGTCGCCGCCAAGTCCGCGAGCGACGAGCACCGCACCCTGTACGTCACGGGTGAGGAGTCGGCGAGCC
AGGTGCGGCTGCGCGCCGACCGTATCCACGCCATCGACGACCACCTCTATCTCGCCGCCGAGACCGATCTCGCCGCCGTG
CTCGGGCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGGTCGCGTCCCCCGAGATCGACGG
CGCCCCGGGCGGCATGGCCCAGGTGCGCGAGGTGGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCACGC
TCCTCGTGGGACACGTCACCAAGGACGGCGCCATCGCCGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTGGTGCTGCAC
TTCGAGGGCGACCGGCACGCGCGCCTGCGTCTGGTCCGCGGCGTCAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCGGACCCGAGCGGCCTCTTCCTGACCCGCCGCGCCGAGCCGGTCC
CGGGCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCTCTGGTCGCCGAGGTGCAGGCGCTCACGGTGGACTCGCAG
ATCCCCTCCCCCCGCCGCACCACCTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTGCTGGAACAGCGCGG
CCGGATCAGCGCCTTGGGCAAAAGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCGGACC
TGGCCGTCGCCCTCGCCCTGGCCTCGGCCGCCAGCGACACCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAAGTGGGC
CTCGCGGGCGAGGTGAGACGCGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCACCGCCTGGGCTTCACGCACGCCCT
GGTGCCGGGCGACCCGGGCAAGGTCCCGGCGGGCATGAAGGTAACGGAAGTGGCGGACATAGGGGACGCGCTGCGGGTCC
TTCCCCGCTCCCGTCGGCGAGAGGCCCCACGGGAGCAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(79-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M3EBR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

42.605

96.383

0.411
  radA Streptococcus pneumoniae D39

42.605

96.383

0.411
  radA Streptococcus pneumoniae R6

42.605

96.383

0.411
  radA Streptococcus pneumoniae Rx1

42.605

96.383

0.411
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.605

96.383

0.411
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4
  radA Streptococcus mitis SK321

43.823

91.277

0.4