Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VP504_RS11235 Genome accession   NZ_CP142108
Coordinates   2453966..2455063 (-) Length   365 a.a.
NCBI ID   WP_325891235.1    Uniprot ID   -
Organism   Grimontia sp. NTOU-MAR1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2448966..2460063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP504_RS11205 (VP504_11205) hemF 2449467..2450318 (-) 852 WP_325894037.1 oxygen-dependent coproporphyrinogen oxidase -
  VP504_RS11210 (VP504_11210) - 2450412..2450969 (-) 558 WP_325891230.1 Sua5/YciO/YrdC/YwlC family protein -
  VP504_RS11215 (VP504_11215) purE 2451201..2451686 (+) 486 WP_325891231.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VP504_RS11220 (VP504_11220) - 2451689..2452825 (+) 1137 WP_325891232.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VP504_RS11225 (VP504_11225) - 2452903..2453469 (-) 567 WP_325891233.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  VP504_RS11230 (VP504_11230) - 2453487..2453963 (-) 477 WP_062712307.1 DUF494 family protein -
  VP504_RS11235 (VP504_11235) dprA 2453966..2455063 (-) 1098 WP_325891235.1 DNA-processing protein DprA Machinery gene
  VP504_RS11240 (VP504_11240) - 2455065..2456099 (-) 1035 WP_325891237.1 LysM domain-containing protein -
  VP504_RS11245 (VP504_11245) def 2456220..2456732 (+) 513 WP_325891238.1 peptide deformylase -
  VP504_RS11250 (VP504_11250) fmt 2456740..2457684 (+) 945 WP_325891239.1 methionyl-tRNA formyltransferase -
  VP504_RS11255 (VP504_11255) rsmB 2457754..2459031 (+) 1278 WP_325891240.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39378.41 Da        Isoelectric Point: 6.6888

>NTDB_id=921733 VP504_RS11235 WP_325891235.1 2453966..2455063(-) (dprA) [Grimontia sp. NTOU-MAR1]
MSRELEWWLRLAAVPRLGSQAVSKIISRHPPHKLESLEEIELAALGLKSTQIQALRQPDFSIIDKCLTWASAPGRHIISL
TDSRYPYLLKQISGAPPLLFVDGDPHILSLPQLAIVGSRHASNDGLSLAHAFAKELAAHDVVVTSGLALGIDGRAHRGAL
DGKGKTIAVLGSGLEKIYPARHRQLSDDIRDNGALVSELWPWSPPKPAFFPRRNRIISGLSAGVLVVEAAMKSGSLITAR
LALEQGRDVFALPGSIHNPHAKGSNGLIKQGAFLVESVDEILEQVGALAGCAINHQLEVAQAQVLQEELPFPELLANVGN
EARCVDVLAEICDEPVHEIMMQLLELELQGLVTAVPGGYVRTRRG

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=921733 VP504_RS11235 WP_325891235.1 2453966..2455063(-) (dprA) [Grimontia sp. NTOU-MAR1]
ATGTCTCGCGAGCTTGAGTGGTGGCTTAGGCTCGCCGCCGTTCCCCGCCTCGGTAGTCAGGCAGTCAGTAAGATCATCAG
TCGGCACCCACCGCATAAACTGGAATCGCTTGAGGAGATAGAACTCGCCGCACTTGGTTTAAAGTCCACTCAGATACAGG
CGCTGCGGCAACCTGACTTTTCCATCATCGACAAATGCCTGACCTGGGCATCAGCACCGGGCAGGCACATTATTTCCCTG
ACTGATTCCCGCTATCCTTACCTGTTGAAGCAAATTAGTGGCGCGCCCCCTCTTTTATTTGTCGATGGTGATCCCCATAT
ACTGTCACTACCGCAACTCGCGATAGTCGGTAGTCGTCATGCATCCAATGATGGCTTGTCACTGGCGCATGCGTTTGCCA
AAGAGCTGGCAGCCCATGATGTGGTTGTAACCAGCGGGTTAGCTCTGGGGATTGATGGTCGTGCTCACCGCGGTGCACTC
GATGGCAAAGGGAAAACTATTGCTGTGTTGGGCTCGGGACTTGAGAAAATTTATCCAGCCAGACACCGTCAACTGTCTGA
CGATATCAGGGATAATGGTGCTCTGGTGTCAGAGCTTTGGCCCTGGTCACCGCCAAAACCAGCATTTTTCCCGAGACGAA
ATCGTATTATCAGCGGTCTATCTGCAGGAGTGCTGGTGGTGGAGGCAGCAATGAAGAGTGGTTCGCTGATCACCGCTAGG
CTGGCGCTTGAACAAGGGCGAGATGTCTTTGCTTTACCGGGCTCTATCCATAACCCGCATGCGAAAGGCAGTAACGGCTT
GATAAAGCAGGGTGCTTTTCTGGTGGAGTCGGTAGACGAGATTTTAGAGCAGGTTGGCGCATTGGCCGGTTGCGCAATTA
ACCACCAGTTGGAGGTCGCTCAGGCCCAAGTTTTGCAAGAAGAATTGCCATTTCCTGAACTGTTGGCTAACGTAGGAAAT
GAAGCAAGATGTGTCGATGTGCTTGCAGAGATCTGCGATGAACCCGTTCACGAAATCATGATGCAGTTGTTAGAACTTGA
GCTACAGGGGCTGGTAACAGCGGTACCCGGTGGTTATGTCAGAACGAGGAGGGGATAG

Domains

Predicted by InterProScan.

DprA winged helix domain (DprA_WH)

(313-358)

DNA recombination-mediator protein A (DNA_processg_A)

(74-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.923

99.452

0.556
  dprA Vibrio cholerae strain A1552

51.762

100

0.523
  dprA Glaesserella parasuis strain SC1401

47.154

100

0.477
  dprA Legionella pneumophila strain ERS1305867

43.767

98.904

0.433
  dprA Haemophilus influenzae Rd KW20

45.238

92.055

0.416
  dprA Neisseria meningitidis strain C311

38.402

100

0.408
  dprA Neisseria meningitidis MC58

38.402

100

0.408
  dprA Acinetobacter baylyi ADP1

39.017

94.795

0.37