Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VDS57_RS09665 Genome accession   NZ_CP141839
Coordinates   1819357..1819875 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain PN1236     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1814357..1824875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS09635 (VDS57_09635) yyaJ 1814867..1816222 (+) 1356 WP_029318525.1 MFS transporter -
  VDS57_RS09640 (VDS57_09640) maa 1816256..1816810 (-) 555 WP_041336710.1 sugar O-acetyltransferase -
  VDS57_RS09645 (VDS57_09645) yyaH 1816826..1817206 (-) 381 WP_015250784.1 VOC family protein -
  VDS57_RS09650 (VDS57_09650) ccpB 1817262..1818192 (-) 931 Protein_1896 transcriptional regulator CcpB -
  VDS57_RS09655 (VDS57_09655) xth 1818251..1819009 (-) 759 WP_121549260.1 exodeoxyribonuclease III -
  VDS57_RS09660 (VDS57_09660) rpsR 1819074..1819313 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  VDS57_RS09665 (VDS57_09665) ssbA 1819357..1819875 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  VDS57_RS09670 (VDS57_09670) rpsF 1819916..1820203 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  VDS57_RS09675 (VDS57_09675) ychF 1820314..1821414 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  VDS57_RS09680 (VDS57_09680) yyaE 1821541..1823544 (-) 2004 WP_121549262.1 molybdopterin-dependent oxidoreductase -
  VDS57_RS09685 (VDS57_09685) yyzM 1823595..1823801 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=920148 VDS57_RS09665 WP_003219228.1 1819357..1819875(-) (ssbA) [Bacillus subtilis strain PN1236]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=920148 VDS57_RS09665 WP_003219228.1 1819357..1819875(-) (ssbA) [Bacillus subtilis strain PN1236]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378