Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VO179_RS01615 Genome accession   NZ_CP141827
Coordinates   360803..361702 (+) Length   299 a.a.
NCBI ID   WP_033574575.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 355803..366702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS01595 (VO179_01595) - 356493..358196 (+) 1704 WP_324635850.1 glycosyl transferase -
  VO179_RS01600 (VO179_01600) - 358193..358474 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  VO179_RS01605 (VO179_01605) sucC 358649..359806 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  VO179_RS01610 (VO179_01610) sucD 359835..360737 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  VO179_RS01615 (VO179_01615) dprA 360803..361702 (+) 900 WP_033574575.1 DNA-processing protein DprA Machinery gene
  VO179_RS01620 (VO179_01620) topA 361884..363959 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  VO179_RS01625 (VO179_01625) trmFO 364024..365331 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VO179_RS01630 (VO179_01630) xerC 365401..366318 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32894.16 Da        Isoelectric Point: 8.4593

>NTDB_id=919861 VO179_RS01615 WP_033574575.1 360803..361702(+) (dprA) [Bacillus velezensis strain XHA14]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPKLDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYMEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=919861 VO179_RS01615 WP_033574575.1 360803..361702(+) (dprA) [Bacillus velezensis strain XHA14]
TTGGATCAAGCATCGCGATGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGAAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATATGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368