Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   VF946_RS01180 Genome accession   NZ_CP141824
Coordinates   226566..227279 (+) Length   237 a.a.
NCBI ID   WP_024393394.1    Uniprot ID   A0AAP6A155
Organism   Streptococcus suis strain HB18     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 221566..232279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS01170 treC 222633..224258 (-) 1626 WP_238716846.1 alpha,alpha-phosphotrehalase -
  VF946_RS01175 treP 224339..226333 (-) 1995 WP_074389394.1 PTS system trehalose-specific EIIBC component -
  VF946_RS01180 treR 226566..227279 (+) 714 WP_024393394.1 trehalose operon repressor Regulator
  VF946_RS01185 - 227337..227648 (+) 312 WP_002935948.1 hypothetical protein -
  VF946_RS01190 - 227645..228193 (+) 549 WP_002935945.1 CvpA family protein -
  VF946_RS01195 - 228688..231021 (+) 2334 WP_024405878.1 endonuclease MutS2 -
  VF946_RS01200 - 231045..231757 (+) 713 Protein_203 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27234.08 Da        Isoelectric Point: 6.7422

>NTDB_id=919745 VF946_RS01180 WP_024393394.1 226566..227279(+) (treR) [Streptococcus suis strain HB18]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVFQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=919745 VF946_RS01180 WP_024393394.1 226566..227279(+) (treR) [Streptococcus suis strain HB18]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTGTTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTACGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.709

98.734

0.511