Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VF946_RS00815 Genome accession   NZ_CP141824
Coordinates   128591..128986 (+) Length   131 a.a.
NCBI ID   WP_011921737.1    Uniprot ID   A0A0Z9FQS6
Organism   Streptococcus suis strain HB18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 123591..133986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS00785 pepA 123735..124796 (-) 1062 WP_012775476.1 glutamyl aminopeptidase -
  VF946_RS00790 - 125489..125773 (+) 285 WP_012774909.1 DUF4651 domain-containing protein -
  VF946_RS00795 - 125770..126090 (+) 321 WP_011921732.1 thioredoxin family protein -
  VF946_RS00800 - 126135..127082 (+) 948 WP_074389610.1 DUF1002 domain-containing protein -
  VF946_RS00805 ytpR 127101..127724 (+) 624 WP_024406063.1 YtpR family tRNA-binding protein -
  VF946_RS00810 - 127757..128536 (-) 780 WP_011922565.1 DUF2785 domain-containing protein -
  VF946_RS00815 ssbA 128591..128986 (+) 396 WP_011921737.1 single-stranded DNA-binding protein Machinery gene
  VF946_RS00820 - 129105..129350 (-) 246 WP_014917177.1 hypothetical protein -
  VF946_RS00825 groES 129548..129829 (+) 282 WP_012774911.1 co-chaperone GroES -
  VF946_RS00830 groL 129840..131462 (+) 1623 WP_012774912.1 chaperonin GroEL -
  VF946_RS00835 rpsL 131694..132107 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  VF946_RS00840 rpsG 132124..132594 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14868.73 Da        Isoelectric Point: 5.0026

>NTDB_id=919744 VF946_RS00815 WP_011921737.1 128591..128986(+) (ssbA) [Streptococcus suis strain HB18]
MYNKTILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=919744 VF946_RS00815 WP_011921737.1 128591..128986(+) (ssbA) [Streptococcus suis strain HB18]
ATGTATAATAAAACAATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACTGTCGCAGTCAATCGCCGATTTAAGACAGAAAATGGTGAGCGTGAAGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAGACACTTGTTTCTTATGGCAGCAAGGGTAGTCTGATTTCTATTGATGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAGATTCTAGGCCAATCTTTCCAATTACTAGAAAGCCGTGCTCA
ACGTGCCATGCGTGAAAATAATACTGGTGATGACCTAGCTGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z9FQS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374