Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VER99_RS14330 Genome accession   NZ_CP141822
Coordinates   3129115..3130224 (-) Length   369 a.a.
NCBI ID   WP_020333544.1    Uniprot ID   A0AAN1CXN6
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3124115..3135224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VER99_RS14300 (VER99_14300) hemF 3124568..3125485 (-) 918 WP_020333539.1 oxygen-dependent coproporphyrinogen oxidase -
  VER99_RS14305 (VER99_14305) - 3125534..3126091 (-) 558 WP_014233380.1 L-threonylcarbamoyladenylate synthase -
  VER99_RS14310 (VER99_14310) purE 3126297..3126782 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VER99_RS14315 (VER99_14315) - 3126787..3127920 (+) 1134 WP_020333541.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VER99_RS14320 (VER99_14320) - 3127981..3128550 (-) 570 WP_020333542.1 type I DNA topoisomerase -
  VER99_RS14325 (VER99_14325) - 3128633..3129112 (-) 480 WP_031779194.1 DUF494 family protein -
  VER99_RS14330 (VER99_14330) dprA 3129115..3130224 (-) 1110 WP_020333544.1 DNA-processing protein DprA Machinery gene
  VER99_RS14335 (VER99_14335) - 3130208..3131302 (-) 1095 WP_020333545.1 LysM peptidoglycan-binding domain-containing protein -
  VER99_RS14340 (VER99_14340) def 3131441..3131959 (+) 519 WP_014233386.1 peptide deformylase -
  VER99_RS14345 (VER99_14345) fmt 3131994..3132941 (+) 948 WP_020333546.1 methionyl-tRNA formyltransferase -
  VER99_RS14350 (VER99_14350) rsmB 3133024..3134307 (+) 1284 WP_020333547.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39925.74 Da        Isoelectric Point: 6.8793

>NTDB_id=919723 VER99_RS14330 WP_020333544.1 3129115..3130224(-) (dprA) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MKPLNENDLVAWLKLSCLPGIGGVKLNKLLAKDTPRNIINSSHEYLQRLGLSQKQLQAWTSADKEVEACLNWKEIASNHH
ILTLDDPLYPPLLKQIVAPPPLLFLQGDPTCLSQPQIAIVGSRNASVDGLQYARHFAADFVSNDLIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLAHIYPARHRGLAQRVADSGALISEFRPNAKPRPEHFPRRNRIISGLSLGVFVVEAAEKSGSL
ITARYALEQGREVFALPASINAKNASGGNHLIRNGACLVEKTKDVLDEIQSLLDWSVNQSRDLFSTLIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=919723 VER99_RS14330 WP_020333544.1 3129115..3130224(-) (dprA) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGAAACCACTCAATGAGAATGACCTTGTTGCCTGGCTGAAGCTAAGTTGCTTGCCAGGCATAGGCGGGGTCAAGCTGAA
TAAGTTACTTGCAAAAGACACGCCTCGAAACATCATCAACTCCTCTCATGAATACCTGCAGCGCCTTGGACTAAGTCAGA
AGCAACTTCAGGCTTGGACGTCAGCCGATAAAGAAGTTGAAGCTTGCCTCAATTGGAAAGAGATCGCTTCGAACCACCAT
ATTCTGACTTTAGATGATCCGCTTTACCCTCCGCTACTTAAACAGATTGTTGCACCGCCGCCCCTGTTGTTTTTGCAAGG
CGATCCTACGTGTTTATCTCAGCCTCAGATTGCTATAGTGGGAAGCCGTAACGCGAGTGTTGACGGATTACAGTACGCCC
GACACTTTGCTGCAGATTTCGTCAGTAATGATCTTATTGTAACCAGTGGATTAGCTTTGGGCATTGATGGTCATGCGCAT
GACGGAGCGTTGCAAGCGGGAGGAAAGACGATAGCAGTTCTTGGTTCTGGCTTAGCTCATATTTACCCAGCGCGGCACCG
GGGGTTGGCGCAGCGCGTCGCAGATAGCGGTGCACTGATTTCAGAATTTCGCCCCAATGCGAAACCAAGGCCGGAACACT
TTCCACGTCGCAACCGAATTATTAGTGGGTTATCTCTGGGGGTGTTTGTTGTCGAAGCGGCAGAGAAAAGCGGTTCTTTA
ATTACGGCCCGTTATGCGCTTGAGCAAGGACGAGAAGTGTTTGCTCTGCCCGCTTCTATTAATGCGAAAAATGCCAGTGG
CGGAAATCATTTGATTCGCAATGGTGCTTGCCTCGTAGAAAAGACAAAAGATGTACTCGATGAAATACAGTCATTACTTG
ATTGGTCTGTTAATCAGAGCAGAGATTTATTTTCTACCTTAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTCTCAGGGCACGTTGTTGCAGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.114

100

0.821
  dprA Vibrio cholerae strain A1552

57.682

100

0.58
  dprA Glaesserella parasuis strain SC1401

45.283

100

0.455
  dprA Legionella pneumophila strain ERS1305867

47.04

86.992

0.409
  dprA Haemophilus influenzae Rd KW20

42.939

94.038

0.404
  dprA Neisseria meningitidis strain C311

35.516

100

0.382
  dprA Neisseria meningitidis MC58

35.516

100

0.382
  dprA Neisseria gonorrhoeae MS11

34.684

100

0.371
  dprA Neisseria gonorrhoeae strain FA1090

34.43

100

0.369