Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AB2M34_RS12465 Genome accession   NZ_CP161903
Coordinates   2294216..2294647 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain DYJ24     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2289216..2299647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS12455 (AB2M34_12455) hexA 2290700..2293276 (-) 2577 WP_046160418.1 DNA mismatch repair protein MutS Machinery gene
  AB2M34_RS12460 (AB2M34_12460) cotE 2293409..2293954 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  AB2M34_RS12465 (AB2M34_12465) ymcA 2294216..2294647 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  AB2M34_RS12470 (AB2M34_12470) miaB 2294649..2296178 (-) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AB2M34_RS12475 (AB2M34_12475) kbl 2296326..2297504 (-) 1179 WP_014479819.1 glycine C-acetyltransferase -
  AB2M34_RS12480 (AB2M34_12480) tdh 2297517..2298560 (-) 1044 WP_014479818.1 L-threonine 3-dehydrogenase -
  AB2M34_RS12485 (AB2M34_12485) spoVS 2298824..2299084 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=919510 AB2M34_RS12465 WP_003231834.1 2294216..2294647(-) (ymcA) [Bacillus subtilis strain DYJ24]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=919510 AB2M34_RS12465 WP_003231834.1 2294216..2294647(-) (ymcA) [Bacillus subtilis strain DYJ24]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AACAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAATCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1