Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QZD84_RS00775 Genome accession   NZ_CP141290
Coordinates   157356..158468 (+) Length   370 a.a.
NCBI ID   WP_308386280.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 152356..163468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS00755 rsmB 153276..154559 (-) 1284 WP_308386281.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QZD84_RS00760 fmt 154640..155587 (-) 948 WP_020839886.1 methionyl-tRNA formyltransferase -
  QZD84_RS00765 def 155621..156139 (-) 519 WP_005461416.1 peptide deformylase -
  QZD84_RS00770 - 156278..157372 (+) 1095 WP_005497418.1 LysM peptidoglycan-binding domain-containing protein -
  QZD84_RS00775 dprA 157356..158468 (+) 1113 WP_308386280.1 DNA-processing protein DprA Machinery gene
  QZD84_RS00780 - 158471..158950 (+) 480 WP_005461440.1 DUF494 family protein -
  QZD84_RS00785 - 159029..159598 (+) 570 WP_015297511.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  QZD84_RS00790 - 159661..160794 (-) 1134 WP_140251267.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QZD84_RS00795 purE 160799..161284 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QZD84_RS00800 - 161484..162041 (+) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  QZD84_RS00805 hemF 162089..163006 (+) 918 WP_021483936.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39793.37 Da        Isoelectric Point: 6.4130

>NTDB_id=916958 QZD84_RS00775 WP_308386280.1 157356..158468(+) (dprA) [Vibrio parahaemolyticus strain BM26A]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLSQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=916958 QZD84_RS00775 WP_308386280.1 157356..158468(+) (dprA) [Vibrio parahaemolyticus strain BM26A]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTCTCAATTGGGTTTAACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAATCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTTGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.865

100

0.849
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Legionella pneumophila strain ERS1305867

47.866

88.649

0.424
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373