Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABK27_RS01875 Genome accession   NZ_AP027899
Coordinates   416582..417214 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 2018-10-2CC     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 411582..422214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK27_RS01850 (VEE75_03640) yhfG 411714..411881 (+) 168 WP_000736862.1 YhfG family protein -
  AABK27_RS01855 (VEE75_03650) fic 411871..412473 (+) 603 WP_338386003.1 putative adenosine monophosphate-protein transferase Fic -
  AABK27_RS01860 (VEE75_03660) pabA 412505..413068 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  AABK27_RS01865 (VEE75_03670) argD 413154..414374 (+) 1221 WP_000963784.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABK27_RS01870 (VEE75_03680) yhfK 414441..416531 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AABK27_RS01875 (VEE75_03690) crp 416582..417214 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABK27_RS01880 (VEE75_03700) yhfA 417516..417920 (+) 405 WP_001148908.1 OsmC family protein -
  AABK27_RS01885 (VEE75_03710) prkB 417975..418844 (-) 870 WP_001274680.1 phosphoribulokinase -
  AABK27_RS01890 (VEE75_03720) yheU 418898..419116 (-) 219 WP_000907085.1 YheU family protein -
  AABK27_RS01895 (VEE75_03730) yheT 419110..420132 (-) 1023 WP_000057405.1 hydrolase -
  AABK27_RS01900 (VEE75_03740) yheS 420132..422045 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=91569 AABK27_RS01875 WP_000242755.1 416582..417214(-) (crp) [Escherichia coli strain 2018-10-2CC]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=91569 AABK27_RS01875 WP_000242755.1 416582..417214(-) (crp) [Escherichia coli strain 2018-10-2CC]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467