Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   TQH59_RS00865 Genome accession   NZ_CP140708
Coordinates   171839..172972 (-) Length   377 a.a.
NCBI ID   WP_201702175.1    Uniprot ID   A0AA42MQI1
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 166839..177972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS00835 (TQH59_00835) - 167048..167638 (-) 591 WP_201702162.1 hypothetical protein -
  TQH59_RS00840 (TQH59_00840) - 167771..168145 (-) 375 WP_279668208.1 RcnB family protein -
  TQH59_RS00845 (TQH59_00845) - 168345..168890 (-) 546 WP_004984048.1 glutathione peroxidase -
  TQH59_RS00850 (TQH59_00850) - 169014..169568 (-) 555 WP_087013940.1 hypothetical protein -
  TQH59_RS00855 (TQH59_00855) - 169904..170824 (+) 921 WP_201702166.1 DMT family transporter -
  TQH59_RS00860 (TQH59_00860) - 171224..171793 (-) 570 WP_010325660.1 L-threonylcarbamoyladenylate synthase -
  TQH59_RS00865 (TQH59_00865) dprA 171839..172972 (-) 1134 WP_201702175.1 DNA-processing protein DprA Machinery gene
  TQH59_RS00870 (TQH59_00870) tsaP 172995..174149 (-) 1155 WP_125281524.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  TQH59_RS00875 (TQH59_00875) def 174270..174803 (+) 534 WP_201702181.1 peptide deformylase -
  TQH59_RS00880 (TQH59_00880) - 174894..175331 (+) 438 WP_078389804.1 DUF2946 family protein -
  TQH59_RS00885 (TQH59_00885) - 175403..177472 (+) 2070 WP_279668211.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41647.22 Da        Isoelectric Point: 6.5882

>NTDB_id=915060 TQH59_RS00865 WP_201702175.1 171839..172972(-) (dprA) [Acinetobacter johnsonii strain FAHZZU3567hy]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVAASNLQIWPNLGLHKSHLQRVIEIQTSAGQTKLQTLLHDV
QASCDFILLDTESHYPSQLLPYSDRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKYQRTIAVMGTGLDLTYPSQHQALRTQILENNGCIITEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAKSAAEQGKTIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQETTPSASIEIPS
DLLELYNQLDWVGQNMDQLNFKLNIDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=915060 TQH59_RS00865 WP_201702175.1 171839..172972(-) (dprA) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTAGTTCAGCATTCTTTATCAAGCTTTCA
AAAACTACAACAACATTTTGGCACAAGCACAAAAGCCGTTGCTGCCTCCAATCTTCAGATCTGGCCAAATCTCGGCTTAC
ACAAAAGTCATCTACAACGTGTCATAGAAATTCAAACATCTGCTGGCCAAACCAAATTACAAACTTTACTGCATGACGTC
CAAGCCAGTTGTGATTTTATTTTGCTTGATACTGAAAGTCATTATCCCTCGCAACTGCTGCCCTATTCTGACCGGCCACC
GATTTTATTTGGTCAGGGTAATCCACAAAGCCTATTACAACCTCAAGTTGCTATCGTTGGCAGTCGAAAACCCAGTCCAC
ACGGCAAACAAGTGGCTTATGACTTTGCCTATTACCTCGCCGAAAAGGGCTTTTATATTTGCAGTGGTTTGGCTGAAGGC
ATTGATGCAGCGGCACATCAGGGCGGCTTAAAATATCAACGTACCATTGCAGTGATGGGCACGGGCTTAGATCTCACTTA
CCCATCCCAACATCAAGCCCTGCGTACGCAAATATTAGAAAATAATGGCTGTATCATTACTGAATTTTTACCACATACAC
CGCCTTTACAGCATAATTTTCCACGGCGCAACCGCATCGTCAGTGCATTGAGTTTAGGGGTTGTGGTTGCAGAAGCCGCA
CTCAAAAGTGGCTCTCTTGGTACAGCCAAATCTGCTGCTGAACAAGGGAAAACCATTTTTGCGATTCCCGGTCATATTTA
CAGCGAACACCATCAAGGTTGTCATCAACTGATCCGAGAAGGGGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACTTGGCACTCCCCACTCAATGGCATAGCCAATCCCAGTCACAAGAAACCACCCCAAGTGCTAGTATTGAGATCCCATCT
GATTTACTCGAACTTTATAATCAACTGGATTGGGTTGGACAAAATATGGATCAACTTAATTTCAAACTTAACATCGATAT
TGCCACACTCACTAGCCAGTTAATGGAACTGGAGATTTTAGGACTCGCACAACAACAGGCTGGCAATTATCTGCGTTGCC
GTTCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.489

99.735

0.663

  dprA Acinetobacter baumannii D1279779

65.691

99.735

0.655

  dprA Acinetobacter baylyi ADP1

61.155

100

0.618