Detailed information NTG0915047

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: U6037_RS24810
• Genome accession: NZ_CP140706
• Coordinates: 5615314..5616660 (+)
• Length: 448 a.a.
• NCBI ID: WP_322844850.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B33.4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5610314..5621660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6037_RS24785	pgeF	5610520..5611242 (-)	723	WP_322844849.1	peptidoglycan editing factor PgeF	-
U6037_RS24790	rluD	5611239..5612201 (-)	963	WP_034153865.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
U6037_RS24795	-	5612353..5613369 (+)	1017	WP_007909854.1	outer membrane protein assembly factor BamD	-
U6037_RS24800	-	5613496..5613738 (+)	243	WP_160059470.1	PP0621 family protein	-
U6037_RS24805	pilS	5613728..5615317 (+)	1590	WP_322847362.1	ATP-binding protein	Regulator
U6037_RS24810	pilR	5615314..5616660 (+)	1347	WP_322844850.1	sigma-54 dependent transcriptional regulator	Regulator
U6037_RS24815	thiO	5616776..5617876 (-)	1101	WP_322844851.1	glycine oxidase ThiO	-
U6037_RS24820	-	5617935..5618336 (-)	402	WP_322844852.1	type IV pilin protein	-
U6037_RS24825	-	5618352..5621435 (-)	3084	WP_322844853.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50009.38 Da
• Isoelectric Point: 6.7671

>NTDB_id=915047 U6037_RS24810 WP_322844850.1 5615314..5616660(+) (pilR) [Pseudomonas sp. B33.4]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLHRETFALCLTDMRLPDGTGLELVQHIQQSYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAVGGVCTSIDRRLLGDSQPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLKRLAKDTGQPVARLHAQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAGDLRLSEGNCAAEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=915047 U6037_RS24810 WP_322844850.1 5615314..5616660(+) (pilR) [Pseudomonas sp. B33.4]
TTGAACACGAGCCCACGGCAAAAAATTCTTATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCTTGGG
ACGGATGAAACTCGACACTTACAGTGCCCGCAATCTGGCTGAAGCCCAGGCGCTGTTGCATCGCGAGACATTCGCCTTGT
GCCTGACCGACATGCGTCTGCCCGACGGTACGGGGCTGGAACTGGTGCAGCACATTCAGCAAAGTTATCCACAACTGCCG
GTGGCGATGATCACCGCGTACGGCAGTCTGGAAACGGCCATCAACGCTTTGAAAGCAGGTGCTTTCGACTTTCTGACCAA
ACCGGTAGACCTCACCCGCTTGCGCGAACTGGTCGGTACAGCCCTGCGCATGCCAGCCGTGGGCGGGGTTTGCACCTCGA
TTGATCGACGGCTGCTGGGTGATTCACAGCCGATGCGCAACCTGCGCAAGCAAATCGACAAACTCGCTCGCAGTCAGGCG
CCGGTGTACATCAGCGGCGAATCCGGCAGCGGTAAAGAACTGGTCGCGCGACTGATCCACGAACAGGGCCCGCGTGCCAG
CCAGCCGTTTGTGCCAGTGAACTGCGGGGCGATTCCGTCAGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGCAAAGGCA
GTTTTACCGGCGCCGTCGAGGACAAACCCGGACTGTTTCAAGCGGCCCATGGCGGCACGTTGTTTCTTGATGAGGTGGCG
GACTTGCCGCTGTCGATGCAGGTAAAACTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGTGTCGGTGGCCAGCAGGA
AAGCGTGGTCGATGTACGTATTCTTTGCGCGACACACAAGGATCTTGATGCTGAAGTGGCTGCCGAGCGATTCCGCCAAG
ACCTCTATTACCGCTTGAACGTGATCGAACTGCGCGTGCCGTCGCTGCGTGAGCGCCGTGATGACATTGAAGTGCTGGCG
GCGCATATGCTCAAGCGTTTGGCCAAGGACACGGGTCAACCCGTGGCGCGCTTGCATGCGCAGGCGTTGGAAGCGCTGAA
GAACTATCGGTTTCCGGGGAATGTGCGGGAGTTGGAGAACGTGCTCGAACGAGCGCACACCTTGTGTGAAAACCGGACGA
TCGAGGCTGGGGATTTACGCCTGAGCGAGGGCAATTGCGCGGCTGAGGGCGGGATTGCTGATCTGACGCAGATCGACAAT
CTTGAGGATTATCTGGAGAACGTGGAAAGAAAGCTGATTCTGCAAGCGCTGGAAGAAACACGCTGGAATCGCACGGCGGC
GGCGCAGCGCTTGAGTCTTTCGTTCAGGTCGATGCGCTATCGGCTGAAGAAACTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	48.802	100	0.5