Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SR852_RS13035 Genome accession   NZ_CP140161
Coordinates   2531875..2532471 (-) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus licheniformis strain ATCC 14580     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2526875..2537471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS13015 (SR852_13015) - 2527232..2527930 (+) 699 WP_003182905.1 DnaD domain-containing protein -
  SR852_RS13020 (SR852_13020) nth 2527947..2528609 (+) 663 WP_003182903.1 endonuclease III -
  SR852_RS13025 (SR852_13025) - 2528606..2529109 (+) 504 WP_003182901.1 YpoC family protein -
  SR852_RS13030 (SR852_13030) - 2529130..2531817 (-) 2688 WP_009328005.1 penicillin-binding protein 1A -
  SR852_RS13035 (SR852_13035) recU 2531875..2532471 (-) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  SR852_RS13040 (SR852_13040) - 2532525..2533484 (+) 960 WP_003182894.1 DUF2515 domain-containing protein -
  SR852_RS13045 (SR852_13045) sspM 2533517..2533621 (-) 105 WP_009328007.1 acid-soluble spore protein SspM -
  SR852_RS13050 (SR852_13050) - 2533821..2534048 (+) 228 WP_003182890.1 YppD family protein -
  SR852_RS13055 (SR852_13055) - 2534106..2534477 (+) 372 WP_003182887.1 YppE family protein -
  SR852_RS13060 (SR852_13060) - 2534510..2534710 (-) 201 WP_011198064.1 YppF family protein -
  SR852_RS13065 (SR852_13065) - 2534890..2535333 (+) 444 WP_011198063.1 YppG family protein -
  SR852_RS13070 (SR852_13070) - 2535352..2535771 (-) 420 WP_003182880.1 hypothetical protein -
  SR852_RS13075 (SR852_13075) - 2535947..2536453 (+) 507 WP_003182879.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=913237 SR852_RS13035 WP_003182896.1 2531875..2532471(-) (recU) [Bacillus licheniformis strain ATCC 14580]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=913237 SR852_RS13035 WP_003182896.1 2531875..2532471(-) (recU) [Bacillus licheniformis strain ATCC 14580]
GTGATTCGTTACCCGAACGGCAAATCCTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACACCTGTACAGATTGTCCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTTATCAAAGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGAACCTC
GTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833