Detailed information NTG0912506

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: SO574_RS01265
• Genome accession: NZ_CP140102
• Coordinates: 272753..273757 (-)
• Length: 334 a.a.
• NCBI ID: WP_128811839.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain VA-1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 267753..278757

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SO574_RS01235 (SO574_01235)	zapB	267860..268102 (+)	243	WP_128811847.1	cell division protein ZapB	-
SO574_RS01240 (SO574_01240)	rraA	268212..268718 (-)	507	WP_221070311.1	ribonuclease E activity regulator RraA	-
SO574_RS01245 (SO574_01245)	-	268795..269712 (-)	918	WP_322803516.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
SO574_RS01250 (SO574_01250)	hslU	269992..271323 (-)	1332	WP_322803517.1	HslU--HslV peptidase ATPase subunit	-
SO574_RS01255 (SO574_01255)	hslV	271353..271904 (-)	552	WP_038864894.1	ATP-dependent protease subunit HslV	-
SO574_RS01260 (SO574_01260)	-	272070..272612 (-)	543	WP_322803518.1	SPOR domain-containing protein	-
SO574_RS01265 (SO574_01265)	cytR	272753..273757 (-)	1005	WP_128811839.1	DNA-binding transcriptional regulator CytR	Regulator
SO574_RS01270 (SO574_01270)	priA	273962..276163 (-)	2202	WP_322803519.1	primosomal protein N'	-
SO574_RS01275 (SO574_01275)	rpmE	276461..276682 (+)	222	WP_128811835.1	50S ribosomal protein L31	-
SO574_RS01280 (SO574_01280)	rpsJ	277160..277471 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
SO574_RS01285 (SO574_01285)	rplC	277486..278115 (+)	630	WP_128811833.1	50S ribosomal protein L3	-
SO574_RS01290 (SO574_01290)	rplD	278133..278735 (+)	603	WP_128811832.1	50S ribosomal protein L4	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36764.15 Da
• Isoelectric Point: 6.1612

>NTDB_id=912506 SO574_RS01265 WP_128811839.1 272753..273757(-) (cytR) [Vibrio alfacsensis strain VA-1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRQRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTAAFEAVNYLTHLGHKRIAQVSGPETAVLCQFRQQGYQQALRRAGITQNAQYSVVTDFSFEGGAQAVRKLLELSEPPTA
LFCHCDTMAIGAIQEAKRLGWRVPQDLSVVGFDDIQFAQYCDPPLTTVSQPRYEIGRQAMLMMLELLKGHDVHSGSRLLD
TKLVVRGSAAPPLR

Nucleotide

• Length: 1005 bp

>NTDB_id=912506 SO574_RS01265 WP_128811839.1 272753..273757(-) (cytR) [Vibrio alfacsensis strain VA-1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGGGTTTCGACAGCGACAGTTTCACGAGCGCTCATGAACCCAGAAAA
AGTCTCATCTTCCACCAGACAACGTGTTGAAGATGCCGTACTTGAGGCTGGCTATTCTCCAAATTCATTAGCACGCAATT
TACGTAGAAATGAATCAAAAACCATTGTCACTATAGTGCCGGACATTTGTGATCCTTATTTTTCGGAGATCATTCGCGGT
ATCGAAGATGCCGCGATGGAGCATGGCTACTTAGTTCTACTTGGCGATAGCGGGCAGCAGAAAAAGCGTGAGAGCTCATT
CGTCAACTTAGTCTTTACCAAACAAGCCGATGGCATGTTATTGCTAGGTACCGACCTGCCATTTGATGTCAGCAAACCTG
AACAGAAGAATTTGCCTCCTATGGTCATGGCATGTGAGTTCGCCCCTGAGCTTGAACTGCCAACCGTGCACATTGATAAC
CTCACCGCAGCTTTTGAAGCCGTCAACTATCTCACTCACCTAGGACATAAGCGAATCGCACAAGTGTCTGGCCCAGAGAC
GGCTGTACTTTGTCAGTTCCGCCAACAAGGTTATCAGCAAGCACTGCGCCGCGCTGGCATTACTCAGAATGCACAATACA
GCGTAGTTACCGACTTCTCTTTCGAGGGTGGCGCCCAAGCAGTGCGTAAGCTACTCGAACTTTCCGAGCCACCAACCGCC
CTATTTTGTCATTGTGACACGATGGCGATTGGCGCGATCCAAGAAGCAAAACGCCTTGGCTGGCGAGTACCTCAAGATCT
ATCTGTCGTCGGGTTTGATGATATTCAGTTTGCTCAATACTGCGATCCACCGTTAACGACTGTTTCTCAGCCTCGTTATG
AAATTGGCCGACAAGCCATGTTAATGATGTTAGAGCTCCTTAAAGGCCACGACGTACATTCTGGCTCTCGTCTACTTGAT
ACCAAACTTGTCGTACGTGGCAGTGCAGCGCCACCGTTACGATAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	94.012	100	0.94
cytR	Vibrio cholerae C6706	89.458	99.401	0.889