Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   U2P90_RS17780 Genome accession   NZ_CP140098
Coordinates   3642563..3642952 (+) Length   129 a.a.
NCBI ID   WP_322473177.1    Uniprot ID   -
Organism   Deinococcus sp. AB2017081     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3637563..3647952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2P90_RS17755 (U2P90_17755) - 3638195..3639136 (-) 942 WP_322473173.1 carbohydrate ABC transporter permease -
  U2P90_RS17760 (U2P90_17760) - 3639292..3640575 (-) 1284 WP_322473174.1 ABC transporter substrate-binding protein -
  U2P90_RS17765 (U2P90_17765) - 3640662..3641339 (-) 678 WP_322473175.1 glycerophosphodiester phosphodiesterase -
  U2P90_RS17770 (U2P90_17770) - 3641412..3642254 (+) 843 WP_322473176.1 MerR family transcriptional regulator -
  U2P90_RS17775 (U2P90_17775) - 3642285..3642446 (-) 162 WP_295820750.1 hypothetical protein -
  U2P90_RS17780 (U2P90_17780) comEA 3642563..3642952 (+) 390 WP_322473177.1 ComEA family DNA-binding protein Machinery gene
  U2P90_RS17785 (U2P90_17785) comEC 3642985..3645144 (+) 2160 WP_322473178.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U2P90_RS17790 (U2P90_17790) - 3645145..3645504 (-) 360 WP_322473179.1 hypothetical protein -
  U2P90_RS17795 (U2P90_17795) - 3645568..3646569 (-) 1002 WP_322473180.1 Gfo/Idh/MocA family protein -
  U2P90_RS17800 (U2P90_17800) - 3646720..3647844 (-) 1125 WP_322473181.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 13361.63 Da        Isoelectric Point: 11.6185

>NTDB_id=912502 U2P90_RS17780 WP_322473177.1 3642563..3642952(+) (comEA) [Deinococcus sp. AB2017081]
MPSWIPRPDHVWSAVLGAGVLLVGALSIGPVLAPRPHAPAVTRVALPPPRPATAEPPVYASTGSITPLISGRVNVNTATQ
EQLEALPEVGPSLARAIIAGRPHRSLADLDRVKGVGVATLRVLTPLVSF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=912502 U2P90_RS17780 WP_322473177.1 3642563..3642952(+) (comEA) [Deinococcus sp. AB2017081]
ATGCCCAGCTGGATCCCCCGCCCGGATCACGTGTGGAGCGCCGTGCTGGGAGCGGGCGTGCTGCTGGTGGGTGCCCTGAG
CATAGGGCCGGTGCTCGCGCCGCGTCCGCACGCGCCGGCCGTGACCCGGGTGGCCCTGCCGCCCCCCCGGCCCGCCACGG
CTGAACCGCCGGTGTATGCCTCGACGGGCAGCATCACGCCGCTGATCTCGGGGCGCGTGAATGTGAACACGGCCACCCAG
GAGCAGCTGGAGGCGCTGCCGGAGGTCGGGCCGAGCCTCGCGCGGGCGATCATCGCGGGCCGTCCGCACCGCTCGCTGGC
CGACCTCGACCGCGTGAAGGGCGTGGGGGTGGCGACCCTCCGGGTGCTCACGCCGCTGGTGTCGTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(72-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

66.393

94.574

0.628