Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ABVR74_RS06275 Genome accession   NZ_CP159484
Coordinates   1249366..1250421 (+) Length   351 a.a.
NCBI ID   WP_353891555.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CBA3648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1244366..1255421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR74_RS06255 (ABVR74_06255) - 1245608..1245820 (+) 213 WP_353891552.1 hypothetical protein -
  ABVR74_RS06260 (ABVR74_06260) - 1245943..1246266 (+) 324 WP_058218303.1 metalloregulator ArsR/SmtB family transcription factor -
  ABVR74_RS06265 (ABVR74_06265) - 1246278..1248587 (+) 2310 WP_353891553.1 cation-translocating P-type ATPase -
  ABVR74_RS06270 (ABVR74_06270) - 1248600..1248896 (-) 297 WP_353891554.1 hypothetical protein -
  ABVR74_RS06275 (ABVR74_06275) xerS 1249366..1250421 (+) 1056 WP_353891555.1 tyrosine recombinase XerS Machinery gene
  ABVR74_RS06280 (ABVR74_06280) - 1250505..1250792 (+) 288 WP_353891556.1 hypothetical protein -
  ABVR74_RS06285 (ABVR74_06285) xerS 1251273..1252343 (+) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  ABVR74_RS06290 (ABVR74_06290) trmFO 1252388..1253731 (-) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40539.28 Da        Isoelectric Point: 9.5768

>NTDB_id=911658 ABVR74_RS06275 WP_353891555.1 1249366..1250421(+) (xerS) [Lactococcus lactis subsp. lactis strain CBA3648]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITSHASIKEITLKEMENVTKRDL
EAFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDIHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHDYEQSVSNRAKSSFKKNKVRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVRVMRKEGKKDVVP
IAHFSHKYITDYYEARSSLNTDVEALFITDYNQTIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALKKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=911658 ABVR74_RS06275 WP_353891555.1 1249366..1250421(+) (xerS) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGTCAGAAAACCATGGTTATCGTTATAATGTAAATAAACTTATGCTTGAGTTTCCCTACTACGTCAATGAGTTTATCCA
GTCTAAGGACACCGTACCGTTGAGTATTGCCTCTATTTACTCTTACTGCTTAGAATTTAGAAAATACTTGAAATGGATGA
ATGAAAATAACATAACGAGCCATGCTAGCATCAAAGAAATTACTTTGAAAGAAATGGAAAATGTAACGAAACGTGATTTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATACACATACATCAGCACTAAATCGAAC
CATTGCAGCGATTAAGAGCCTATATAACTACTTGTGTGAACAAACTGAAGATATTCACGGAAATACATACATGACGAGAA
ATGTCAGCCGCTTAATTCATATCAGAAAAAAGAGTGAAACCTTGCATTATCGTGCTGCTCAACTAGAAGGTAAACTATTC
CTAGGAGATGAAACCAAAGCCTTTTTAGAATTTGTTGAACATGACTATGAACAGTCTGTCAGTAACCGTGCAAAATCAAG
TTTCAAGAAAAATAAAGTCAGGGATTTAGCTATATTAAGTCTTTTTTTATCATCTGGATTACGTTGTGCTGAACTTGTAG
GAATCAATCTTAACGATTTAAACCTTGAAACTGGAAAAGTAAGAGTGATGCGAAAAGAAGGCAAGAAGGATGTAGTGCCT
ATTGCTCATTTTTCGCATAAATATATAACAGATTATTATGAGGCGAGAAGTAGCTTAAATACTGATGTAGAAGCTTTATT
TATCACGGACTATAATCAAACAATTAGAAAAATTTCTAACGCATCGATAAATAAGCTAGTCGCAAAGTATTCAGAAGCCT
ATAAAGTTAGAGTAACCCCTCATACTCTAAGGCATACATTCGCAACAAGACTCTATAATGTCAGTCACTCTCAAGTCCTT
GTCAGCAACCAATTAGGACATTCTTCAACCAAACCAACTGAGTTGTATACCCATATTGTCAGTGCTGAAGCTAAAGATGC
TTTAAAAAAGTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(186-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

46

99.715

0.459