Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SOM08_RS01630 Genome accession   NZ_CP139793
Coordinates   334435..336063 (+) Length   542 a.a.
NCBI ID   WP_116958862.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SNF1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329435..341063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOM08_RS01605 (SOM08_01605) argS 329820..331493 (+) 1674 WP_322469939.1 arginine--tRNA ligase -
  SOM08_RS01610 (SOM08_01610) - 331502..332179 (+) 678 WP_116958865.1 SPOR domain-containing protein -
  SOM08_RS01615 (SOM08_01615) - 332258..332878 (+) 621 WP_322469940.1 thiol:disulfide interchange protein DsbA/DsbL -
  SOM08_RS01620 (SOM08_01620) lptA 333021..333644 (+) 624 WP_116958863.1 lipopolysaccharide transport periplasmic protein LptA -
  SOM08_RS01625 (SOM08_01625) lptB 333641..334435 (+) 795 WP_181936470.1 LPS export ABC transporter ATP-binding protein -
  SOM08_RS01630 (SOM08_01630) rpoN/rpoN1 334435..336063 (+) 1629 WP_116958862.1 RNA polymerase factor sigma-54 Machinery gene
  SOM08_RS01635 (SOM08_01635) - 336236..337522 (+) 1287 WP_116958861.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  SOM08_RS01640 (SOM08_01640) - 337525..337950 (+) 426 WP_116958860.1 putative toxin-antitoxin system toxin component, PIN family -
  SOM08_RS01645 (SOM08_01645) - 337947..338834 (+) 888 WP_322469941.1 hypothetical protein -
  SOM08_RS01650 (SOM08_01650) - 338844..340466 (-) 1623 WP_322469942.1 FMN-binding glutamate synthase family protein -
  SOM08_RS01655 (SOM08_01655) - 340624..340827 (+) 204 WP_322469943.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 58879.42 Da        Isoelectric Point: 4.6021

>NTDB_id=911038 SOM08_RS01630 WP_116958862.1 334435..336063(+) (rpoN/rpoN1) [Hydrogenophaga sp. SNF1]
MKQSLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERADEGLEREEFGLAATDAPVSAGEQIADAASV
AGPGADAGEGRNEDKASATDGDAVEASVDGAPPVEESWDGDGTVEMAPDDSEWGGDAPPRGSGSGDDEETASAADLARAL
VSLQDHLHEQARCLRLSEADAAALHFLIESLDEDGYLADPLPELALALLRLQGEAAPEADLSDAAATERLEAAEQLLRTA
LQLLQHMDPPGVGARDLAECLKLQILELRNTPEARAALAICAQPLELIAKRDVRKLVQLCRADEDSVRGALALIARLEPK
PGRRFADVERNIVVPDVIVTRAGRGFKVVLNPDVMPRLRVHDVYANAMRQNRGGRDGGEGGHAAMQQRLQEARWFIKNIQ
QRFDTILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSLGTETGGN
ASSTAVRALLKQFIAAEAPAKPLSDNQLSDLLKEQGIECARRTVAKYREAMRIAPANLRKSL

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=911038 SOM08_RS01630 WP_116958862.1 334435..336063(+) (rpoN/rpoN1) [Hydrogenophaga sp. SNF1]
ATGAAGCAGAGCCTGTCGCTACGCGTCTCGCAGCACCTGGCGCTGACGCCCCAGCTGCAGCAGTCGATCCGTCTGCTGCA
GCTCTCGACGCTGGAGATGGCGCAGGAAGTCGAGCAGATGCTCGATGAGAACCCCTTCCTGGAACGCGCCGACGAAGGCC
TGGAGCGCGAGGAATTCGGCCTGGCCGCGACCGATGCGCCGGTGAGCGCGGGCGAGCAGATCGCCGACGCCGCGTCCGTT
GCCGGCCCGGGCGCCGACGCAGGCGAGGGACGCAACGAAGACAAGGCCAGCGCCACCGACGGCGACGCGGTGGAGGCCAG
CGTGGACGGCGCCCCGCCGGTGGAGGAGAGCTGGGACGGCGACGGCACGGTGGAGATGGCGCCCGACGACAGCGAATGGG
GCGGCGACGCGCCGCCGCGCGGCAGCGGCTCCGGCGACGACGAAGAGACCGCCAGCGCGGCCGACCTGGCGCGCGCGCTG
GTGTCGCTGCAGGACCATCTGCATGAGCAGGCGCGCTGCCTGCGCCTGTCCGAGGCGGACGCCGCCGCGCTGCACTTCCT
GATCGAATCGCTGGACGAGGACGGCTACCTTGCCGATCCGCTGCCCGAACTCGCGCTGGCGCTGCTGCGCCTTCAGGGCG
AGGCCGCCCCGGAGGCCGACCTGTCCGACGCCGCCGCCACCGAACGCCTCGAGGCGGCCGAACAGCTGCTGCGCACCGCC
CTGCAGCTGCTGCAGCACATGGACCCGCCCGGCGTGGGCGCGCGCGACCTGGCCGAGTGCCTGAAGCTGCAGATCCTGGA
GCTGCGCAACACGCCCGAGGCGCGCGCCGCGCTGGCGATCTGCGCGCAGCCGCTGGAGCTGATCGCCAAGCGCGACGTGC
GCAAGCTGGTGCAGCTGTGCCGCGCCGACGAAGACAGCGTGCGCGGTGCGCTCGCGCTCATCGCGAGGCTGGAGCCCAAG
CCCGGGCGCCGCTTCGCGGACGTCGAGCGCAACATCGTCGTGCCCGACGTCATCGTCACGCGCGCCGGCCGCGGTTTCAA
GGTGGTGCTCAACCCCGACGTGATGCCGCGCCTGCGCGTGCACGACGTGTACGCCAACGCCATGCGCCAGAACCGCGGTG
GGCGCGATGGGGGCGAAGGTGGCCATGCCGCCATGCAGCAGCGCCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAG
CAGCGCTTCGACACCATCCTGCGCGTGTCCAGCGCCATCGTCGAGCGCCAGCGCAACTTCTTCATGCACGGCGAGCTCGC
CATGCGCCCGCTGGTGCTGCGCGAGATCGCCGACGAGCTGGGCCTGCACGAATCCACCATCAGCCGCGTGACCACGGCCA
AGTACATGGCCACGCCCTTTGGCACCTACGAGCTGAAGTACTTCTTCGGCTCCTCGCTGGGCACCGAGACCGGCGGCAAC
GCCTCCAGCACCGCGGTGCGCGCGCTGCTCAAGCAGTTCATCGCGGCCGAGGCGCCGGCCAAGCCGCTGTCGGACAATCA
GCTCTCCGACCTGCTCAAGGAGCAGGGCATCGAGTGCGCGCGCCGCACCGTGGCCAAGTACCGCGAGGCCATGCGCATCG
CCCCGGCCAACCTTCGAAAATCGCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(157-364)

Sigma-54, DNA binding domain (Sigma54_DBD)

(384-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.916

100

0.513