Detailed information NTG0909823

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: R6Z04_RS20250
• Genome accession: NZ_CP139440
• Coordinates: 3845726..3846871 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain GUCC4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3840726..3851871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R6Z04_RS20225 (R6Z04_20225)	albF	3840742..3842022 (+)	1281	WP_003242974.1	M16 family metallopeptidase	-
R6Z04_RS20230 (R6Z04_20230)	albG	3842019..3842720 (+)	702	WP_003243391.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
R6Z04_RS20235 (R6Z04_20235)	ywhL	3842726..3844102 (-)	1377	WP_003244415.1	YncE family protein	-
R6Z04_RS20240 (R6Z04_20240)	ywhK	3844141..3845496 (-)	1356	WP_003227552.1	YncE family protein	-
R6Z04_RS20245 (R6Z04_20245)	-	3845493..3845723 (-)	231	WP_009968328.1	hypothetical protein	-
R6Z04_RS20250 (R6Z04_20250)	rapF	3845726..3846871 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
R6Z04_RS20255 (R6Z04_20255)	phrF	3846855..3846974 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
R6Z04_RS20260 (R6Z04_20260)	ywhH	3847073..3847546 (+)	474	WP_003227547.1	YbaK/EbsC family protein	-
R6Z04_RS20265 (R6Z04_20265)	speB	3847578..3848450 (-)	873	WP_003227545.1	agmatinase	-
R6Z04_RS20270 (R6Z04_20270)	speE	3848511..3849341 (-)	831	WP_003227543.1	spermidine synthase	-
R6Z04_RS20275 (R6Z04_20275)	pbpG	3849543..3851618 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=909823 R6Z04_RS20250 WP_003227549.1 3845726..3846871(+) (rapF) [Bacillus subtilis strain GUCC4]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=909823 R6Z04_RS20250 WP_003227549.1 3845726..3846871(+) (rapF) [Bacillus subtilis strain GUCC4]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572