Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   NCY62_RS16340 Genome accession   NZ_CP139356
Coordinates   3404847..3407075 (+) Length   742 a.a.
NCBI ID   WP_250733710.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A45P     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3399847..3412075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS16315 (NCY62_16370) lnt 3400228..3401787 (+) 1560 WP_250733711.1 apolipoprotein N-acyltransferase -
  NCY62_RS16320 (NCY62_16375) csaA 3401789..3402127 (-) 339 WP_000434938.1 tRNA-binding protein -
  NCY62_RS16325 (NCY62_16380) - 3402273..3402617 (-) 345 WP_017481973.1 hypothetical protein -
  NCY62_RS16330 (NCY62_16385) gspG 3402884..3403468 (-) 585 WP_057077272.1 type II secretion system major pseudopilin GspG -
  NCY62_RS16335 (NCY62_16390) gspF 3403492..3404697 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  NCY62_RS16340 (NCY62_16395) priA 3404847..3407075 (+) 2229 WP_250733710.1 primosomal protein N' Machinery gene
  NCY62_RS16345 (NCY62_16400) kefB 3407152..3408996 (+) 1845 WP_250733707.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  NCY62_RS16350 (NCY62_16405) hslO 3409160..3410035 (+) 876 WP_002114728.1 Hsp33 family molecular chaperone HslO -
  NCY62_RS16355 (NCY62_16410) - 3410173..3410784 (+) 612 WP_002115157.1 LysE family translocator -
  NCY62_RS16360 (NCY62_16415) cbpA 3410931..3411887 (+) 957 WP_057077274.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84088.86 Da        Isoelectric Point: 8.5611

>NTDB_id=909088 NCY62_RS16340 WP_250733710.1 3404847..3407075(+) (priA) [Acinetobacter pittii strain A45P]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPNETFTGTFQLKAISDLL
DEQPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=909088 NCY62_RS16340 WP_250733710.1 3404847..3407075(+) (priA) [Acinetobacter pittii strain A45P]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTACATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCACGTAGGCTCACGCGTTGCTATTTCATTTGGACGACAAAATCTGA
TTGGCATCATTACTGAAAAAGTTGACCCAAATGAAACATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GACGAACAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCGGCTCAGTATTACCAATTTCCAATTGGCGA
GGTCATGCAAACCGCCCTACCCGCATTATTGCGTCAGGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATTACAC
CATGTGATAATGTTGAAGCACTTCTTAAACGTTCTGTTAAGCAACAAGACGCATATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGTACGCTTGAACCACACGATTTTAGCCCATCGCCCGTTCAATTGGCACAAATGCCGCTCACGCTAAATGAAGATCAAA
AGAAAGCAACTCAGCACGTCGTAAACGCACAGCATCAATACCAAGCTTTTTTGTTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTCAAGCAAGGTAAGCAAGTACTGGTGTTAGTCCCAGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAGTCTCGTTTTAACTGTGATATTGCTCTATTACACTCGGGCTTAAATGACTCCA
AACGCTTGCAGGCATGGCAACAGGCCCAGACTGGCAAAGCATCTATTATTTTAGGGACACGCTCTGCCATCTATACGCCA
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAACATGACCTCTCTTATAAACAGCAAGAAGGCTTCCGCTACCATGC
ACGTGATGTCGCTCTTTATCGAGGCCACTTACAAAACTGTCCTGTTATTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGCAAATTAACCTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTGCCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAACATGGAATTAGCCAACCTCTTATTGAGCAAATCAAGCATACGTTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTCTGTGAAAGTTGTGGGTGGCAAGCAA
ATTGTCCACATTGTGATGCACATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTACCCGATCACTGCCCTGAATGCCAGCAAAAAAGCCTAAAAACCCTAGGTGCTGGAACAGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGCACCAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGGATTCATCAAAACAAACCAACAATTTTGCTTGGTACTCAAATGTTGGCAAAAGGTCACCATTTCCCA
CACGTGACTTTGGTTGCTATTTTAGATATTGATGCTGGGTTACTGAGTGTCGACATTCGTGCGCCAGAACGTACTGCACA
GTTAATTGTACAAGTCGCGGGTCGTGCAGGCCGTGGTGAACATAAAGGCCATGTTTATTTACAAACCCTAAGACCAGATC
ACCCTTTACTCACCACGCTCATCGAAAAAGATTATCGGGCGGTTGCCAAACAGACTCTTGCGGAACGTAAAGTCGCATTG
CTGCCACCTTATCGTTATGCAGTACTGATACGTGCAGAATCTAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
GGCGGAACAATTACGCCAAATTGCAGGTGAAATTGTTGATATCTGGGGTCCAATTCCAGCACCGATGGAACGTAAAGCTG
GGCGCTACCGCGCCCACATGGTGATTTTATCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGGCAATGGTGGTCACAA
TTGGTTCATGCACCACGGCAGCATCAACTTCGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.978

100

0.98