Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   SON02_RS05625 Genome accession   NZ_CP139211
Coordinates   1316507..1316821 (-) Length   104 a.a.
NCBI ID   WP_135027183.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1311507..1321821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS05590 (SON02_05575) - 1311634..1312491 (-) 858 WP_135027171.1 pyridoxamine kinase -
  SON02_RS05595 (SON02_05580) - 1312811..1314001 (-) 1191 WP_135027173.1 acetate kinase -
  SON02_RS05600 (SON02_05585) comYH 1314051..1315004 (-) 954 WP_135027174.1 class I SAM-dependent methyltransferase Machinery gene
  SON02_RS05605 (SON02_05590) comGG 1315027..1315422 (-) 396 WP_135027176.1 competence type IV pilus minor pilin ComGG -
  SON02_RS05610 (SON02_05595) comYF 1315433..1315867 (-) 435 WP_135027179.1 competence type IV pilus minor pilin ComGF Machinery gene
  SON02_RS05615 (SON02_05600) comGE 1315854..1316108 (-) 255 WP_228063764.1 competence type IV pilus minor pilin ComGE -
  SON02_RS05620 (SON02_05605) comGD 1316119..1316496 (-) 378 WP_373273837.1 competence type IV pilus minor pilin ComGD -
  SON02_RS05625 (SON02_05610) comGC/cglC 1316507..1316821 (-) 315 WP_135027183.1 competence type IV pilus major pilin ComGC Machinery gene
  SON02_RS05630 (SON02_05615) comYB 1316823..1317851 (-) 1029 WP_135027184.1 competence type IV pilus assembly protein ComGB Machinery gene
  SON02_RS05635 (SON02_05620) comGA/cglA/cilD 1317772..1318722 (-) 951 WP_135027186.1 competence type IV pilus ATPase ComGA Machinery gene
  SON02_RS05640 (SON02_05625) - 1318892..1319254 (-) 363 WP_135027188.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11528.50 Da        Isoelectric Point: 9.7144

>NTDB_id=908056 SON02_RS05625 WP_135027183.1 1316507..1316821(-) (comGC/cglC) [Streptococcus sp. LysM4]
MKKLKKLTVRGFTLIEMLVVLFIISILLLLFIPNISKQKETVKQAGNAAVVKVVEGQAELYELQNGREASLSKLVEAGAV
TEAQAEAYNEYYAKNTDKSRTVNP

Nucleotide


Download         Length: 315 bp        

>NTDB_id=908056 SON02_RS05625 WP_135027183.1 1316507..1316821(-) (comGC/cglC) [Streptococcus sp. LysM4]
ATGAAAAAATTGAAAAAGTTAACCGTCAGAGGATTTACTCTAATAGAAATGCTAGTGGTCTTATTTATCATCAGTATTTT
ATTGCTCTTATTCATCCCTAATATAAGTAAGCAAAAAGAAACTGTTAAGCAGGCAGGCAATGCAGCTGTTGTAAAAGTTG
TAGAGGGGCAAGCTGAATTGTATGAATTACAAAATGGAAGAGAAGCAAGCCTGTCTAAATTGGTAGAGGCAGGAGCAGTT
ACGGAAGCACAGGCAGAAGCCTACAATGAATACTATGCGAAAAATACAGATAAATCTCGTACAGTCAACCCATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis SK321

65.347

97.115

0.635
  comYC Streptococcus gordonii str. Challis substr. CH1

63.107

99.038

0.625
  comGC/cglC Streptococcus mitis NCTC 12261

65

96.154

0.625
  comYC Streptococcus mutans UA140

63.725

98.077

0.625
  comYC Streptococcus mutans UA159

63.725

98.077

0.625
  comGC/cglC Streptococcus pneumoniae TIGR4

60.396

97.115

0.587
  comGC/cglC Streptococcus pneumoniae D39

60.396

97.115

0.587
  comGC/cglC Streptococcus pneumoniae Rx1

60.396

97.115

0.587
  comGC/cglC Streptococcus pneumoniae R6

60.396

97.115

0.587
  comYC Streptococcus suis isolate S10

59.091

84.615

0.5
  comGC Lactococcus lactis subsp. cremoris KW2

50.485

99.038

0.5
  comGC Staphylococcus aureus MW2

48.235

81.731

0.394
  comGC Staphylococcus aureus N315

48.235

81.731

0.394