Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SH598_RS08195 Genome accession   NZ_CP139086
Coordinates   1648351..1649250 (+) Length   299 a.a.
NCBI ID   WP_320562560.1    Uniprot ID   -
Organism   Bacillus velezensis strain YN-2A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1643351..1654250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS08175 (SH598_08175) - 1644041..1645744 (+) 1704 WP_039251516.1 hypothetical protein -
  SH598_RS08180 (SH598_08180) - 1645741..1646022 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  SH598_RS08185 (SH598_08185) sucC 1646197..1647354 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  SH598_RS08190 (SH598_08190) sucD 1647383..1648285 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  SH598_RS08195 (SH598_08195) dprA 1648351..1649250 (+) 900 WP_320562560.1 DNA-processing protein DprA Machinery gene
  SH598_RS08200 (SH598_08200) topA 1649432..1651507 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  SH598_RS08205 (SH598_08205) trmFO 1651572..1652879 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SH598_RS08210 (SH598_08210) xerC 1652949..1653866 (+) 918 WP_039251511.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32894.10 Da        Isoelectric Point: 8.4593

>NTDB_id=907159 SH598_RS08195 WP_320562560.1 1648351..1649250(+) (dprA) [Bacillus velezensis strain YN-2A]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPKLDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPTVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=907159 SH598_RS08195 WP_320562560.1 1648351..1649250(+) (dprA) [Bacillus velezensis strain YN-2A]
TTGGATCAAGCATCGCGATGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGAAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGACTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368
  dprA Legionella pneumophila strain ERS1305867

43.2

83.612

0.361