Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   SGJ46_RS12260 Genome accession   NZ_CP138461
Coordinates   2534241..2535119 (-) Length   292 a.a.
NCBI ID   WP_168384797.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2529241..2540119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS12240 miaB 2530794..2532248 (+) 1455 WP_005182171.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  SGJ46_RS12245 - 2532290..2533363 (+) 1074 WP_016659561.1 PhoH family protein -
  SGJ46_RS12250 ybeY 2533383..2533865 (+) 483 WP_005182166.1 rRNA maturation RNase YbeY -
  SGJ46_RS12255 - 2533954..2534244 (+) 291 WP_177155322.1 antibiotic biosynthesis monooxygenase family protein -
  SGJ46_RS12260 tonB2 2534241..2535119 (-) 879 WP_168384797.1 energy transducer TonB Machinery gene
  SGJ46_RS12265 - 2535359..2536042 (+) 684 WP_016659565.1 hypothetical protein -
  SGJ46_RS12270 - 2536196..2536909 (+) 714 WP_177155321.1 DUF3108 domain-containing protein -
  SGJ46_RS12275 - 2536999..2537574 (+) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  SGJ46_RS12280 - 2537791..2538171 (+) 381 WP_005182135.1 hypothetical protein -
  SGJ46_RS12285 - 2538229..2538411 (-) 183 WP_045796412.1 hypothetical protein -
  SGJ46_RS12290 wrbA 2538713..2539309 (-) 597 WP_075167263.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33054.74 Da        Isoelectric Point: 9.1867

>NTDB_id=902935 SGJ46_RS12260 WP_168384797.1 2534241..2535119(-) (tonB2) [Acinetobacter indicus strain CZH-5]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHTMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=902935 SGJ46_RS12260 WP_168384797.1 2534241..2535119(-) (tonB2) [Acinetobacter indicus strain CZH-5]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
AGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCAG
TCAGCTTAAGACCAAGTGCCACCGAAATTAAGGATGCCGACTTTTTAGCACAGGCCGACCAGCAGGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCCCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
GGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACCACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTGGAAGAATTAAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTAGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTTAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCAGCCGGTTATCTGGAAAAATTCCGTCAGAAAGTCGAATTTTATGGTAACCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGTTGGCCGGTGAGGTGCGTTTAATGGTGATTTTAAATGCCAACGGTGGGATTCGTGCGATTCGTTTAATTGAA
AGCTCGGGGCATACCATGCTGGATGAAGCTGCCAAGGCTTCTGTGCGTAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTACGCATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.344

95.548

0.729