Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SE146_RS02345 Genome accession   NZ_CP138339
Coordinates   448897..449562 (+) Length   221 a.a.
NCBI ID   WP_319078477.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH2288     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443897..454562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE146_RS02320 (SE146_02310) cysT 444185..445012 (-) 828 WP_003699619.1 sulfate ABC transporter permease subunit CysT -
  SE146_RS02325 (SE146_02315) - 445193..445525 (+) 333 WP_047926879.1 hypothetical protein -
  SE146_RS02330 (SE146_02320) - 445852..446361 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  SE146_RS02335 (SE146_02325) - 446591..447172 (-) 582 WP_033910016.1 superoxide dismutase -
  SE146_RS02340 (SE146_02330) dnaB 447336..448742 (+) 1407 WP_123771571.1 replicative DNA helicase -
  SE146_RS02345 (SE146_02335) pilH 448897..449562 (+) 666 WP_319078477.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SE146_RS02350 (SE146_02340) pilV 449594..450205 (+) 612 WP_250328389.1 type IV pilus modification protein PilV Machinery gene
  SE146_RS02355 (SE146_02345) pilJ 450202..451131 (+) 930 WP_250328390.1 PilW family protein Machinery gene
  SE146_RS02360 (SE146_02350) pilK 451110..451721 (+) 612 WP_123768185.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SE146_RS02365 (SE146_02355) pilL 451723..452196 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  SE146_RS02370 (SE146_02360) - 452266..452574 (-) 309 WP_025456241.1 AzlD family protein -
  SE146_RS02375 (SE146_02365) - 452571..453280 (-) 710 Protein_461 AzlC family ABC transporter permease -
  SE146_RS02380 (SE146_02370) dut 453446..453898 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24562.96 Da        Isoelectric Point: 8.3295

>NTDB_id=901914 SE146_RS02345 WP_319078477.1 448897..449562(+) (pilH) [Neisseria gonorrhoeae strain TH2288]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGWGMLAFGDKNGDKAYDGDVADVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQYLTERSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=901914 SE146_RS02345 WP_319078477.1 448897..449562(+) (pilH) [Neisseria gonorrhoeae strain TH2288]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCGATAAGGCATATGACGGCGA
TGTGGCGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGTATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAAGTTTGTCCTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

90.045

100

0.9