Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | SB378_RS08135 | Genome accession | NZ_CP137886 |
| Coordinates | 1780971..1782038 (+) | Length | 355 a.a. |
| NCBI ID | WP_003252365.1 | Uniprot ID | I7B6K4 |
| Organism | Pseudomonas putida strain PD689 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1775971..1787038
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SB378_RS08115 (SB378_08115) | fdxA | 1776040..1776363 (-) | 324 | WP_003252355.1 | ferredoxin FdxA | - |
| SB378_RS08120 (SB378_08120) | mutS | 1776504..1779077 (-) | 2574 | WP_010952693.1 | DNA mismatch repair protein MutS | - |
| SB378_RS08125 (SB378_08125) | - | 1779262..1780329 (+) | 1068 | WP_049588159.1 | hypothetical protein | - |
| SB378_RS08130 (SB378_08130) | - | 1780385..1780867 (+) | 483 | WP_010952695.1 | CinA family protein | - |
| SB378_RS08135 (SB378_08135) | recA | 1780971..1782038 (+) | 1068 | WP_003252365.1 | recombinase RecA | Machinery gene |
| SB378_RS08140 (SB378_08140) | recX | 1782060..1782530 (+) | 471 | WP_010952696.1 | recombination regulator RecX | - |
| SB378_RS08145 (SB378_08145) | - | 1782807..1783925 (-) | 1119 | WP_010952697.1 | LOG family protein | - |
| SB378_RS08150 (SB378_08150) | - | 1784086..1784295 (+) | 210 | WP_020193312.1 | hypothetical protein | - |
| SB378_RS08155 (SB378_08155) | - | 1784310..1784729 (-) | 420 | WP_003252372.1 | quorum-sensing-regulated virulence factor family protein | - |
| SB378_RS08160 (SB378_08160) | - | 1784946..1785656 (+) | 711 | WP_003252373.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| SB378_RS08165 (SB378_08165) | erdR | 1785836..1786486 (+) | 651 | WP_010952699.1 | response regulator transcription factor ErdR | - |
| SB378_RS08170 (SB378_08170) | - | 1786560..1786925 (+) | 366 | WP_010952700.1 | diacylglycerol kinase | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37544.89 Da Isoelectric Point: 5.3228
>NTDB_id=900981 SB378_RS08135 WP_003252365.1 1780971..1782038(+) (recA) [Pseudomonas putida strain PD689]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLKAGAAAEAGKAAAAEADADDMADADAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLKAGAAAEAGKAAAAEADADDMADADAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=900981 SB378_RS08135 WP_003252365.1 1780971..1782038(+) (recA) [Pseudomonas putida strain PD689]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGTGACCATGAGCGTCAAGGCATTCCGGCCATCTCCACCGGCTCGCTGGGGCTGGATATCGCCCTGGGCATCGGCG
GTCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCGGAATCGTCGGGTAAGACCACGCTGACCCTGTCTGTCATCGCT
GAAGCGCAAAAGAACGGTGCTACCTGCGCCTTCGTCGACGCCGAACATGCCCTTGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAGGCCCTTGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTCGACGTGATCATTGTCGACTCCGTTGCCGCGCTGGTACCGAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCATGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCACTGCGTAAGATCACCGGTAACATCAAGAACGCGAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCCC
TGAAGTTCTATGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCTCCGTTCCGTCAGGCTGAGTTCCAGATTCTTTACGGGAAAGGTAT
CTACCGTAACGGCGAGATCATTGATCTGGGGGTATCTCAGGGCCTGGTCGAAAAGTCCGGCGCCTGGTACGCCTACCAAG
GCAACAAGATCGGTCAAGGCAAAGCCAACGCTGCCAAGTACCTGGCTGAGAACCCGGCTATTGGTGCCGAGATCGAGAAG
CAGATTCGTGAGAAGTTGCTGAAAGCGGGTGCTGCTGCTGAAGCCGGCAAAGCTGCTGCTGCTGAAGCTGATGCCGATGA
CATGGCCGACGCTGACGCCGGTTATTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGTGACCATGAGCGTCAAGGCATTCCGGCCATCTCCACCGGCTCGCTGGGGCTGGATATCGCCCTGGGCATCGGCG
GTCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCGGAATCGTCGGGTAAGACCACGCTGACCCTGTCTGTCATCGCT
GAAGCGCAAAAGAACGGTGCTACCTGCGCCTTCGTCGACGCCGAACATGCCCTTGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAGGCCCTTGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTCGACGTGATCATTGTCGACTCCGTTGCCGCGCTGGTACCGAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCATGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCACTGCGTAAGATCACCGGTAACATCAAGAACGCGAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCCC
TGAAGTTCTATGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCTCCGTTCCGTCAGGCTGAGTTCCAGATTCTTTACGGGAAAGGTAT
CTACCGTAACGGCGAGATCATTGATCTGGGGGTATCTCAGGGCCTGGTCGAAAAGTCCGGCGCCTGGTACGCCTACCAAG
GCAACAAGATCGGTCAAGGCAAAGCCAACGCTGCCAAGTACCTGGCTGAGAACCCGGCTATTGGTGCCGAGATCGAGAAG
CAGATTCGTGAGAAGTTGCTGAAAGCGGGTGCTGCTGCTGAAGCCGGCAAAGCTGCTGCTGCTGAAGCTGATGCCGATGA
CATGGCCGACGCTGACGCCGGTTATTGA
Similar proteins
Only experimentally validated proteins are listed.