Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   R2B70_RS01825 Genome accession   NZ_CP137630
Coordinates   400675..402114 (+) Length   479 a.a.
NCBI ID   WP_042074418.1    Uniprot ID   -
Organism   Aeromonas sp. XH     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395675..407114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B70_RS01795 (R2B70_01795) mlaF 396253..397053 (-) 801 WP_209794250.1 phospholipid ABC transporter ATP-binding protein MlaF -
  R2B70_RS01800 (R2B70_01800) - 397260..398255 (+) 996 WP_318162490.1 KpsF/GutQ family sugar-phosphate isomerase -
  R2B70_RS01805 (R2B70_01805) kdsC 398255..398809 (+) 555 WP_042074412.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  R2B70_RS01810 (R2B70_01810) lptC 398806..399366 (+) 561 WP_042074414.1 LPS export ABC transporter periplasmic protein LptC -
  R2B70_RS01815 (R2B70_01815) lptA 399353..399871 (+) 519 WP_042074415.1 lipopolysaccharide transport periplasmic protein LptA -
  R2B70_RS01820 (R2B70_01820) lptB 399884..400609 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  R2B70_RS01825 (R2B70_01825) rpoN/rpoN1 400675..402114 (+) 1440 WP_042074418.1 RNA polymerase factor sigma-54 Machinery gene
  R2B70_RS01830 (R2B70_01830) hpf 402135..402422 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  R2B70_RS01835 (R2B70_01835) ptsN 402425..402871 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  R2B70_RS01840 (R2B70_01840) rapZ 402912..403778 (+) 867 WP_318162491.1 RNase adapter RapZ -
  R2B70_RS01845 (R2B70_01845) npr 403795..404067 (+) 273 WP_042074425.1 PTS phosphocarrier protein NPr -
  R2B70_RS01850 (R2B70_01850) - 404083..405987 (-) 1905 WP_318162492.1 BglG family transcription antiterminator -
  R2B70_RS01855 (R2B70_01855) dagF 406094..406834 (-) 741 WP_318162493.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53715.54 Da        Isoelectric Point: 4.3778

>NTDB_id=899516 R2B70_RS01825 WP_042074418.1 400675..402114(+) (rpoN/rpoN1) [Aeromonas sp. XH]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSEAEAQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPELPWLNEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=899516 R2B70_RS01825 WP_042074418.1 400675..402114(+) (rpoN/rpoN1) [Aeromonas sp. XH]
ATGAAGCCGACATTACAGTTGCGCCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTGAGGCAGAGGCACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GACGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCCGCCGGTACGGCCCAGAGTGCAGGGCCCATTCACGACGG
GGAGGACAGCATCTATCAGGGGGAAACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCCTTCA
GCGACGTGGATGCAGCGATCGCGCTGGCCATCATCGATGCCATCGACGAATCCGGCTATCTGACGGCCACCCTCGAAGAT
ATTCAGGCTGCAGTCAGCAGCGAAGAGGTAGAAGTCGAACTGGATGAGGTCGAAGCGGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTACAGGAGTGCCTGCTTATCCAGCTCGGCCAGTATTCGCCTGAATTGCCCT
GGCTCAACGAGGCCAGGGAGGTGATCCGCGAGCACATGGATCTGCTCGGCAATCGCGACTATCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGTGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGGCCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGGAGCAAGTGGGTGGTGGAGCTCAATCCGG
ACTCGGCACCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGTACGGATACCCAGTTC
ATCCGTTCCCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGTCTGGAGAGCCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGTATCGTCGAGCAGCAGCAGGGCTTCTTCGAGTATGGCGAAGAGGCGATGAAACCCATGGTGCTCAATGACATCGCCG
AGGCCGTGGAGATGCATGAGTCGACCATTTCCAGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGTGCGCTCATCAA
GAAGCTGGTGACGGCGGAGAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGAGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.58

100

0.484