Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   R6U80_RS03115 Genome accession   NZ_CP137623
Coordinates   612897..613496 (-) Length   199 a.a.
NCBI ID   WP_003129593.1    Uniprot ID   -
Organism   Lactococcus lactis strain NCK401     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 607897..618496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS03105 (R6U80_03105) acnA 609026..611572 (+) 2547 WP_058221036.1 aconitate hydratase AcnA -
  R6U80_RS03110 (R6U80_03110) icd 611593..612831 (+) 1239 WP_313791813.1 NADP-dependent isocitrate dehydrogenase -
  R6U80_RS03115 (R6U80_03115) clpP 612897..613496 (-) 600 WP_003129593.1 ATP-dependent Clp protease proteolytic subunit Regulator
  R6U80_RS03120 (R6U80_03120) - 613693..614223 (+) 531 WP_003129594.1 hypothetical protein -
  R6U80_RS03125 (R6U80_03125) spx 614383..614781 (+) 399 WP_003129597.1 transcriptional regulator Spx -
  R6U80_RS03130 (R6U80_03130) - 615163..616326 (-) 1164 WP_058221072.1 ABC transporter permease -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22082.24 Da        Isoelectric Point: 4.7423

>NTDB_id=899391 R6U80_RS03115 WP_003129593.1 612897..613496(-) (clpP) [Lactococcus lactis strain NCK401]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=899391 R6U80_RS03115 WP_003129593.1 612897..613496(-) (clpP) [Lactococcus lactis strain NCK401]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGCGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGCATTATCATGCTGACAGGACCTGTTGAAGATGGAATGGCAAATTCTATCATTGCTCAACTTCTTTTCTTGGATG
CACAAGATAACACTAAAGATATTTATCTCTACGTAAATACGCCTGGTGGTTCTGTATCTGCTGGTCTTGCCATTGTTGAT
ACAATGAATTTTATCAAATCAGATGTTCAAACTATCGTTATGGGAATGGCTGCCTCTATGGGAACAATCATTGCTTCAAG
CGGAACAAAAGGCAAACGATTCATGTTGCCAAATGCTGAATATCTTATTCACCAACCAATGGGTGGTACAGGTCAAGGCA
CTCAACAAACTGATATGGCTATTGTTGCTGAGCAACTTTTGAAAACTCGTAAACGTTTGGAACAAATTCTTGCTGATAAT
TCCAACCGTTCACTTGAACAAATTCACAAAGATGCCGAACGTGACCATTGGATGGATGCCAAAGAAACTTTGGAATATGG
TTTCATCGATGAAATTATGGAAAATAATTCCTTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  clpP Lactococcus lactis subsp. cremoris KW2

99.497

100

0.995
  clpP Streptococcus mutans UA159

87.755

98.492

0.864
  clpP Streptococcus thermophilus LMD-9

87.245

98.492

0.859
  clpP Streptococcus thermophilus LMG 18311

87.245

98.492

0.859
  clpP Streptococcus pyogenes MGAS315

86.224

98.492

0.849
  clpP Streptococcus pyogenes JRS4

86.224

98.492

0.849
  clpP Streptococcus pneumoniae D39

85.128

97.99

0.834
  clpP Streptococcus pneumoniae TIGR4

85.128

97.99

0.834
  clpP Streptococcus pneumoniae R6

85.128

97.99

0.834
  clpP Streptococcus pneumoniae Rx1

85.128

97.99

0.834
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.477

96.985

0.548
  clpP Bacillus subtilis subsp. subtilis str. 168

57.368

95.477

0.548