Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R5023_RS15600 Genome accession   NZ_CP137504
Coordinates   3354763..3355398 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain HPA0124     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3349763..3360398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5023_RS15585 (R5023_15585) - 3350469..3351713 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  R5023_RS15590 (R5023_15590) - 3351801..3352334 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  R5023_RS15595 (R5023_15595) comA 3352465..3354690 (+) 2226 WP_033938021.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R5023_RS15600 (R5023_15600) exbB 3354763..3355398 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R5023_RS15605 (R5023_15605) - 3355395..3355835 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  R5023_RS15610 (R5023_15610) lpxK 3355835..3356833 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  R5023_RS15615 (R5023_15615) - 3356871..3357056 (+) 186 WP_003091157.1 Trm112 family protein -
  R5023_RS15620 (R5023_15620) kdsB 3357056..3357820 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R5023_RS15625 (R5023_15625) - 3357820..3358284 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  R5023_RS15630 (R5023_15630) murB 3358281..3359300 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=898555 R5023_RS15600 WP_003091163.1 3354763..3355398(+) (exbB) [Pseudomonas aeruginosa strain HPA0124]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=898555 R5023_RS15600 WP_003091163.1 3354763..3355398(+) (exbB) [Pseudomonas aeruginosa strain HPA0124]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81