Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ABC810_RS09225 Genome accession   NZ_CP155532
Coordinates   1823138..1825504 (+) Length   788 a.a.
NCBI ID   WP_000454503.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP264     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1818138..1830504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC810_RS09200 (ABC810_09190) - 1820427..1820975 (-) 549 WP_000622953.1 CvpA family protein -
  ABC810_RS09205 (ABC810_09195) zapA 1820972..1821274 (-) 303 WP_000002019.1 cell division protein ZapA -
  ABC810_RS09210 (ABC810_09200) rnhC 1821361..1822233 (+) 873 WP_000146861.1 ribonuclease HIII -
  ABC810_RS09215 (ABC810_09205) lepB 1822245..1822859 (+) 615 WP_001048155.1 signal peptidase I -
  ABC810_RS09220 (ABC810_09210) - 1822939..1823061 (+) 123 WP_001815645.1 hypothetical protein -
  ABC810_RS09225 (ABC810_09215) recD/recD2/recDB 1823138..1825504 (+) 2367 WP_000454503.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ABC810_RS09230 (ABC810_09220) tig 1825552..1826835 (-) 1284 WP_000116466.1 trigger factor -
  ABC810_RS09235 (ABC810_09225) - 1827634..1828770 (-) 1137 WP_000682970.1 mannitol-1-phosphate 5-dehydrogenase -
  ABC810_RS09240 (ABC810_09230) - 1828832..1829269 (-) 438 WP_000764147.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88541.38 Da        Isoelectric Point: 4.6257

>NTDB_id=896738 ABC810_RS09225 WP_000454503.1 1823138..1825504(+) (recD/recD2/recDB) [Streptococcus pneumoniae strain SP264]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMVLSKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGEQKSHHLETIQKH
ITTIEQELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLSNQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSKESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKGDKVIHLVNDAEINVFNGDLGAITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDHAIQ
HIGTARKTYLIERFSDLLENVEEKQQAVSETVTSSASEQSYILTEENWNRIPAMIGITDTDLKEIFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=896738 ABC810_RS09225 WP_000454503.1 1823138..1825504(+) (recD/recD2/recDB) [Streptococcus pneumoniae strain SP264]
ATGGAAGTTTATTTTTCAGGAACCATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTCCTCCTAGA
AATCGACGATACGGACGCAGAGGATTTTGATGATTTTGAAATCATTGTCACAGGAACCATGGCTGATGTAATTGAGGGCG
AAGACTATACTTTTTGGGGGCAAATTGTCCAGCACTCCAAGTATGGAGAACAACTGCAAATCAGTCGTTATGATCGCGCA
AAACCAACTAGTAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGGATTGGTCTCAAGACAGCTCAGAAAAT
CGTGGATACCTATGGCGAAAATACCATTGACGAAATTTTGCAACACCCAGAAAAGTTAGAAGGCATCGCAGGACTCTCTG
CCAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACGGAGATGGTTTTGTCCAAACTAGCCAACTAC
GGCATTCCCAACAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA
CCAGCTGGTTGAGGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAACTAGCTGAGGAACTAGGCATCGAAAGTCAGG
CTCCTGAACGCTTCCGCGCCGGTCTAGTTCACAGTCTTTTTCAGGCCTGTATGGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAGTCTTCCCGTCCCGTGGAACTAGACCCCAGTCAAGTTGCCCAAGA
GCTCTCCTACCTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAGATCTTTGACAACAGCCTCTTTTTCGCTGAGG
AAGGCATCCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAGAACAGAAGAGTCATCATTTAGAAACCATTCAAAAACAT
ATCACTACTATCGAGCAAGAGCTGGGAATTGAGTATGATAACATTCAAAAACAGGCTATCTGTGATGCTATCCAGAATAA
GGTCTTTATCCTGACAGGTGGACCTGGTACTGGTAAGACAACTGTTATCAATGGGATCATCGCTGTTTACGCCCTGTTAG
AGGGACTTGACCTCAGGAAGAAAAGCAATCTGCCCATTCTTCTTGCTGCTCCAACTGGACGAGCCGCTCGCCGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACACCGCCACTTGGGAATGACAGGTGACGATGATACCAGTCATCTGGAAGA
TTACCTAGATGCTGACTTTATCATCGTGGATGAATTCTCTATGGTAGATACTTGGCTGTCCAATCAACTCTTCTCCAATA
TCTCTTCTAACAGTAAGATCCTCATCGTAGGTGACAGTGATCAGCTACCTTCTGTCAGTCCTGGACAGGTTCTAGCGGAT
CTGCTTCATATTCCTTTGATTCCTCAGACTCGCTTGGAAAAAATTTATCGACAAAGCAAAGAATCAACCATCGTCACCCT
AGCTAGTCAGATTCGACAGGGCATCTTGCCAGCTGATTTCACCCAAAAAAAAGCTGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATTCCTGCCACCATTGAAAAAATCTTAGGTGCTGCCCTCAGAAATGGTATTCCTGCCCGTGATATCCAAGTT
CTGGCTCCTATGTACCGAGGGACGGCAGGGATTGATGCTATCAATCAGCTCATGCAAGACCTGCTCAATCCCCCACAAAA
AGATCAACTCAGTTTTGAAGCTCCTCAGTGCCACTATCGTAAGGGAGACAAGGTCATTCATTTGGTTAACGATGCTGAAA
TCAATGTCTTTAATGGGGATTTAGGAGCTATCACAGACCTGATTCCTGGTAAATACACCGAATCGAAACAAGACGAGATT
GTCATTGATTTTGATGGTAATGAAGTCTCTTACCCCCGTAACGAATGGTACAAGATTCGCTTGGCCTATGCCATGAGTAT
TCATAAGTCTCAGGGAAGTGAGTTCCCAGTTGTCATCCTACCGATTACTAGTGCTAGCCGACGTATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGTGCCAAAAGCAAACTCATCTTACTAGGCGAATTACAAGCCTTCGACCATGCTATCCAA
CACATCGGAACTGCCCGAAAAACCTATCTGATTGAACGCTTCAGTGATCTACTGGAGAATGTTGAAGAAAAGCAACAAGC
TGTCTCTGAAACAGTCACATCAAGTGCCTCTGAACAATCCTACATCCTAACCGAAGAAAACTGGAACCGCATCCCAGCCA
TGATTGGGATTACAGACACAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

AAA domain (AAA_30)

(332-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.755

97.462

0.397